| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91790120
Identifier: 91790120
GI number: 91790120
Start: 4516397
End: 4517221
Strand: Reverse
Name: 91790120
Synonym: Bpro_4282
Alternate gene names: NA
Gene position: 4517221-4516397 (Counterclockwise)
Preceding gene: 91790123
Following gene: 91790118
Centisome position: 86.87
GC content: 62.79
Gene sequence:
>825_bases ATGAGCATTCGTAAGTGTCTGTGTGCGCTGGCTCTCTGGCTGGGTGCGGTGGCCGGGTCGGCTTGGGCCCAGGGCGGTCC GCTGCTGTTCGCGGTGAACGAGGGCGTGACCTACCGCGTCAACCCCGTCGCCACCGTCGAGCGTTTTCGGGAGATTTCGG AAGACCTGAGCAAACTGCTCAAGCGGCCGGTCAAGGTTCAGCCTGTCACCGACTACAAGGAGCTTGCGGCAGGGTTGGCC GAGCAGCGCTACGACCTGGCCTATGTGCATCCGGCGCACCATTCCATCCGCGCCATGACCAGCGGCGGCTACCACCTCGT GGCGCTGACCAAGGGCTTCACCGAGTACAAGGCCTCGTTCATGGTGCGCGGCGACTCGACGCTGAAAACCCTGGCCGACC TGAAGTCGGGCAAGATCGGCGCGCCCGACGAAGACTCCATCACCTCGGTGATCATGCGCGCCACTTTGCGTGACGCACTG GGCGCGCAGCCGCTGCCCGCCACCTATGTCAAGCTGCAGGAGGCGGTCCCCTTCATGATTGAAAACAACTTTGTGGCGGC TGGCGTCAGCGCATCGCGCGCCGTCGTGAAAAACTGGCAGGACAAAGGCGGCAAGGTGCTGGCCAGCAGCAAGCCGGTCC CCATCAAGCACATGATTGCCAGCAGCAAGCTGTCTGAAGCGCAGCGCGCCCAGCTCACCAGCTACTTCATCGAGCTGGAC CAAAATTCCGAAGGCAAAAAGCGTCTGGCCGCACTGAATGTCCAGGGCTTTCTGGTATCCGACCAGGCCGCCCTGATCGG CTTGGGCAAGTGGCTGAGCATTTGA
Upstream 100 bases:
>100_bases CGCGGGCGTGGCGGCAACGCGGTATGCAGGTTAACCCGAGGGAGTGCAAGAATTTGTAACGTGATAATCGCCGGACGTTC CTATTATCCGAAAGAATTTC
Downstream 100 bases:
>100_bases CGGCACGGGCCTGAGTTACGCACTGCAACACTGCACTAACGTAGTTCCGAGGCCGCCGCGGCGGCCAGTCCATCGGCTGA TTTTTTGGCAAACTCGGCCC
Product: phosphate/phosphonate ABC transporter periplasmic components-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSIRKCLCALALWLGAVAGSAWAQGGPLLFAVNEGVTYRVNPVATVERFREISEDLSKLLKRPVKVQPVTDYKELAAGLA EQRYDLAYVHPAHHSIRAMTSGGYHLVALTKGFTEYKASFMVRGDSTLKTLADLKSGKIGAPDEDSITSVIMRATLRDAL GAQPLPATYVKLQEAVPFMIENNFVAAGVSASRAVVKNWQDKGGKVLASSKPVPIKHMIASSKLSEAQRAQLTSYFIELD QNSEGKKRLAALNVQGFLVSDQAALIGLGKWLSI
Sequences:
>Translated_274_residues MSIRKCLCALALWLGAVAGSAWAQGGPLLFAVNEGVTYRVNPVATVERFREISEDLSKLLKRPVKVQPVTDYKELAAGLA EQRYDLAYVHPAHHSIRAMTSGGYHLVALTKGFTEYKASFMVRGDSTLKTLADLKSGKIGAPDEDSITSVIMRATLRDAL GAQPLPATYVKLQEAVPFMIENNFVAAGVSASRAVVKNWQDKGGKVLASSKPVPIKHMIASSKLSEAQRAQLTSYFIELD QNSEGKKRLAALNVQGFLVSDQAALIGLGKWLSI >Mature_273_residues SIRKCLCALALWLGAVAGSAWAQGGPLLFAVNEGVTYRVNPVATVERFREISEDLSKLLKRPVKVQPVTDYKELAAGLAE QRYDLAYVHPAHHSIRAMTSGGYHLVALTKGFTEYKASFMVRGDSTLKTLADLKSGKIGAPDEDSITSVIMRATLRDALG AQPLPATYVKLQEAVPFMIENNFVAAGVSASRAVVKNWQDKGGKVLASSKPVPIKHMIASSKLSEAQRAQLTSYFIELDQ NSEGKKRLAALNVQGFLVSDQAALIGLGKWLSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29644; Mature: 29512
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRKCLCALALWLGAVAGSAWAQGGPLLFAVNEGVTYRVNPVATVERFREISEDLSKLL CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHH KRPVKVQPVTDYKELAAGLAEQRYDLAYVHPAHHSIRAMTSGGYHLVALTKGFTEYKASF HCCCEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHEEEECCCEEEEEEECCHHHHCEEE MVRGDSTLKTLADLKSGKIGAPDEDSITSVIMRATLRDALGAQPLPATYVKLQEAVPFMI EEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEE ENNFVAAGVSASRAVVKNWQDKGGKVLASSKPVPIKHMIASSKLSEAQRAQLTSYFIELD ECCEEEECCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEC QNSEGKKRLAALNVQGFLVSDQAALIGLGKWLSI CCCCCHHHHEEECCCEEEEECCHHHHCCCHHHCC >Mature Secondary Structure SIRKCLCALALWLGAVAGSAWAQGGPLLFAVNEGVTYRVNPVATVERFREISEDLSKLL CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHH KRPVKVQPVTDYKELAAGLAEQRYDLAYVHPAHHSIRAMTSGGYHLVALTKGFTEYKASF HCCCEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHEEEECCCEEEEEEECCHHHHCEEE MVRGDSTLKTLADLKSGKIGAPDEDSITSVIMRATLRDALGAQPLPATYVKLQEAVPFMI EEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEE ENNFVAAGVSASRAVVKNWQDKGGKVLASSKPVPIKHMIASSKLSEAQRAQLTSYFIELD ECCEEEECCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEC QNSEGKKRLAALNVQGFLVSDQAALIGLGKWLSI CCCCCHHHHEEECCCEEEEECCHHHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA