Click here to switch to the map view.

The map label for this gene is mdcF [H]

Identifier: 91790118

GI number: 91790118

Start: 4513080

End: 4514072

Strand: Reverse

Name: mdcF [H]

Synonym: Bpro_4280

Alternate gene names: 91790118

Gene position: 4514072-4513080 (Counterclockwise)

Preceding gene: 91790120

Following gene: 91790114

Centisome position: 86.8

GC content: 66.47

Gene sequence:

>993_bases
ATGCCCGGCTGGCCGGTGACAATACGCCCTGTGTTAAGCATTCTTCTGGTCACCTTTCCCTTCTTTGCCCTGGTGCTGTG
CGGCTATGCCGCCGCCCGCCGCGCACTGCTGCCGCAGCTCGCGATTCCGGGGCTCAACACCTTTGTGCTGTATTTCGCGC
TGCCATGCATGCTGTACCGCTTTGGCGCGAGCACGCCGGTTGCCCAGCTGCTCGATGCCAGCCTGGTCGCCGTGTACCTG
CTGTGCGCGCTGCTGCTGGTGACGTTCACGATTGCGGTCACACGGGACCGTCCCAAGGGCCGTATCGGATGGAACGATGC
CTCTTTCGGCGCGCTGGTGGCCACTTTCCCCAACACCGGATTCATGGGCGTGCCGCTGCTGGTGGCGCTGCTCGGCGTCA
AGGCGGCCGGCCCGGCGATCGTGACCATCGTGGTGGACCTGCTGGTCACCAGCTCGCTGTGCATTGCGCTGTCGCGGCTG
GACTCGGCCGATATCCACGGCGCTGAGGTGGCCGCCCAAAAAGCGTTGCGCGGCGTGGCGCTCAATCCGATGCCATGGGC
CATTGTGCTGGGCGCCCTGTCGTCGGGCTTCGGGCTCAGCCTGCCCGCGCCGGTGATGCAGACACTGGGGCTGCTGGCCG
ATGCCGCCTCGCCGGTGGCACTGTTCACCATCGGTGCCGTGCTGGCGCGCTCCCAGATGAACACCGCGGAGTCCGTGCCT
TTGCGAGACTATGTGCCGGTGGCGCTCATCAAGCTGGTGATCCATCCGGTGCTGGTCGGGCTGATCGGCTTCGGGGCGAT
TGCCGCCGGCCTGCCGCTGGACCGCTTCGCCCTGACCGTGGTGATCCTGGTGGCCGCCCTGCCCAGTGCCAGCAATGTCG
CCCTGCTGGCCGAGCGTTTCGGCGCCGACAACGGGCGCATTGCGCGGATCATTCTGCTGTCGACGGTGCTGGCGTTTTTC
AGCTTCTCGGCGGCGGTGAGTTTGTTGACCTGA

Upstream 100 bases:

>100_bases
GGTAAGCGGGGATTGGCGTGAAGGAATCGGTAATCGGTAATCTGGATCAGGGGACCGAAAAAAAAGCACAAGGCAGCGGG
AATCATAGCCAGTCACCGGC

Downstream 100 bases:

>100_bases
GAACCCGGAGGCCGTAGCCTGACGCTGGCCTGGCCGGCGCATGTTCAGCATCCATGCCTTGTCCAACACGATATTCCCGC
CCTGATTGATTCGGAGGAAC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MPGWPVTIRPVLSILLVTFPFFALVLCGYAAARRALLPQLAIPGLNTFVLYFALPCMLYRFGASTPVAQLLDASLVAVYL
LCALLLVTFTIAVTRDRPKGRIGWNDASFGALVATFPNTGFMGVPLLVALLGVKAAGPAIVTIVVDLLVTSSLCIALSRL
DSADIHGAEVAAQKALRGVALNPMPWAIVLGALSSGFGLSLPAPVMQTLGLLADAASPVALFTIGAVLARSQMNTAESVP
LRDYVPVALIKLVIHPVLVGLIGFGAIAAGLPLDRFALTVVILVAALPSASNVALLAERFGADNGRIARIILLSTVLAFF
SFSAAVSLLT

Sequences:

>Translated_330_residues
MPGWPVTIRPVLSILLVTFPFFALVLCGYAAARRALLPQLAIPGLNTFVLYFALPCMLYRFGASTPVAQLLDASLVAVYL
LCALLLVTFTIAVTRDRPKGRIGWNDASFGALVATFPNTGFMGVPLLVALLGVKAAGPAIVTIVVDLLVTSSLCIALSRL
DSADIHGAEVAAQKALRGVALNPMPWAIVLGALSSGFGLSLPAPVMQTLGLLADAASPVALFTIGAVLARSQMNTAESVP
LRDYVPVALIKLVIHPVLVGLIGFGAIAAGLPLDRFALTVVILVAALPSASNVALLAERFGADNGRIARIILLSTVLAFF
SFSAAVSLLT
>Mature_329_residues
PGWPVTIRPVLSILLVTFPFFALVLCGYAAARRALLPQLAIPGLNTFVLYFALPCMLYRFGASTPVAQLLDASLVAVYLL
CALLLVTFTIAVTRDRPKGRIGWNDASFGALVATFPNTGFMGVPLLVALLGVKAAGPAIVTIVVDLLVTSSLCIALSRLD
SADIHGAEVAAQKALRGVALNPMPWAIVLGALSSGFGLSLPAPVMQTLGLLADAASPVALFTIGAVLARSQMNTAESVPL
RDYVPVALIKLVIHPVLVGLIGFGAIAAGLPLDRFALTVVILVAALPSASNVALLAERFGADNGRIARIILLSTVLAFFS
FSAAVSLLT

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34294; Mature: 34162

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGWPVTIRPVLSILLVTFPFFALVLCGYAAARRALLPQLAIPGLNTFVLYFALPCMLYR
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FGASTPVAQLLDASLVAVYLLCALLLVTFTIAVTRDRPKGRIGWNDASFGALVATFPNTG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
FMGVPLLVALLGVKAAGPAIVTIVVDLLVTSSLCIALSRLDSADIHGAEVAAQKALRGVA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
LNPMPWAIVLGALSSGFGLSLPAPVMQTLGLLADAASPVALFTIGAVLARSQMNTAESVP
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
LRDYVPVALIKLVIHPVLVGLIGFGAIAAGLPLDRFALTVVILVAALPSASNVALLAERF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GADNGRIARIILLSTVLAFFSFSAAVSLLT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PGWPVTIRPVLSILLVTFPFFALVLCGYAAARRALLPQLAIPGLNTFVLYFALPCMLYR
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FGASTPVAQLLDASLVAVYLLCALLLVTFTIAVTRDRPKGRIGWNDASFGALVATFPNTG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
FMGVPLLVALLGVKAAGPAIVTIVVDLLVTSSLCIALSRLDSADIHGAEVAAQKALRGVA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
LNPMPWAIVLGALSSGFGLSLPAPVMQTLGLLADAASPVALFTIGAVLARSQMNTAESVP
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
LRDYVPVALIKLVIHPVLVGLIGFGAIAAGLPLDRFALTVVILVAALPSASNVALLAERF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GADNGRIARIILLSTVLAFFSFSAAVSLLT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]