Click here to switch to the map view.

The map label for this gene is cph1 [H]

Identifier: 91790114

GI number: 91790114

Start: 4506790

End: 4509129

Strand: Reverse

Name: cph1 [H]

Synonym: Bpro_4276

Alternate gene names: 91790114

Gene position: 4509129-4506790 (Counterclockwise)

Preceding gene: 91790118

Following gene: 91790105

Centisome position: 86.71

GC content: 62.14

Gene sequence:

>2340_bases
GTGAACAGGACAGGCAGCTGCTCGATAACTTTGTCAGGCACCGCGCAGGGCATCATTGACCGCAAGCTCCCCGCCGAGGC
CTTGTGCGCGGGCGGCATGGGTGACACACCATTGCGCCTGCTGGCAGACGCAATACCCCAGATCGTCTGGATGATGCGGG
CCGATGGCAGGTACACCTACTTCAATCGACGGTGGTTTGACTATTGCGGCTTGTCCCTGGAGGAGAGCCTGGACTGCGGC
TGGCCCGGCCTCGTTCATCCCGATGACGGCCCGCGAGTTGCGGAACTTTGGGCGCAGGCATTCAAGAGTGGCGAGACCTG
TGAGGTCGAATACCGTCTGCGCCGGGCCGATGGCGTCTATCGCTGGATGCTGGGCCGGGCGGTTGTGCAATATGATGCGG
CGGGCCTGACGGCCCACTGGCTGGGTACCTTGACCGATATTGACGACCTGAAGCAGGCCGCTGTTTCTCTGGAGAAAGAT
CTCTCCATGAACCGCATCGCTGGCAGGGTTGCGCGCCTGGGGGGATGGACGATTGAACTGCCGGACCGCACGCTGACCTG
GTCGGATGAAAACTGCCTGATTCACGACGTTGCGCCCGGCTATCAACCGACGCTGGAAGAGGGGATCAGCTACTTTCTCC
CGGAGCATCGGCCGATAGTCATCCGTTATGTGCAGGACTGCGCGGAACATGGCACGCCTTACGAATTTGTGCTGCCCAAG
CTCACCGCCAAGGGCCGGCGCATCTGGGTGCGGTCCATTGGCGAGGCAGTGCGTGATGCCACCGGAAAGATCATCCGCAT
TCAGGGGGCCTTCCAGGATATCTCGGAGCAGAAGGAGGCGGAAGCGCGCACGCTCGCGCTGGAGGCACAGCTCCTCACCA
CGCTGGAGAGCATCACCGACGGGTTTTTCCTGATCGACAGGGAATGGAAGTTCACCTTCGTCAACGGTCAGGCAGAGCGA
ATGCTCAAGCGCCGCCGGGAAGACCTGATGGGCCATACGCTGTGGCAGGAACTTCCCGAGGCCGTGGGCGCGCGCATCGA
ACGCGAATACCGCCTGGCGGCTCAAGCGCAACACACGACCCGCTTTGAGGCTTTTCATCAGCCGCTGCAGACCTGGTTTG
CCTTCCACGTCTACCCCACCGAGGCGGGGCTCGCGGTTTACTTTCAGGACATCACCCAGCGGCGTGCAGAGCAGGCGCAG
CTGCGCCTGCTGGAAACGGCGGTTTCGCGCCTGAACGACATGGTGGTCATCACGGAGGCTGAAGCCTTCAGCGATGCGGG
TCCGCGGATTGTTTTTGTGAACGATGCCTTTGAGCGGCACACCGGCTACAGCCGGGAGGAGGCCGTTGGACATACCTCGG
CGCTTCTGTGGGGGCCCAAAACGCAGCAGGCCGAACTGGACCGGATTCGCGCCGCGATGAAAAAGTGGCAAGCGGTACGC
GCGGAAATTGTCGTTTACACCAAGGCCGGTCAGGAGCTCTGGCTGGAAACAGAGGTCGCGCCCATTGCCGACGAGTCCGG
CAGGTTTACCCACTGGGTGGCCGTCGAGCGCGACATTACCGAGCGCCGGCAACAGCAGGAAGAAATTCTCAGTCTCAACG
GCGAACTCGAGGAGCGGGTATTGCTGCGCACAGCCCAGCTCGCAGCGGCGAACAAGGAAATGGAGTCTTTCGCCTACTCC
GTGTCCCATGACCTGCGCTCGCCCCTCAATACCATCCACGGATTCAGCCAGCTGCTCGCGAAGGCCGAAGCAGAAAATAT
CAGCGACAAGGGCAAGCACTACCTGGACCGGATTGGTGTCGGGGTCAAGGAGATGGGCGAGTTGATCGAGGGCCTGCTGA
CCCTGGCCCAGCTGTCCCGCGAGCAGATCAAGTCCGAGCATGTCGATCTTTCGGCAGTCGCCCGGCGGATCGAGCAGGAG
CACCGGGAGCGGGAGCCGCAGCGCCAGGCGCAGGTGCTCATCCAGGAGGGCTTGTGCGTGCAGGGCGACCCCCGCCTGCT
GTCGGCCGTGTTGCAAAACCTGCTGGCCAACGCGTGGAAGTTCACTTCCAGGCAGTCGCTGACGCGGATTGAGGTGGGCT
GCGAGCGGGGCTCCGATGGCGACACCGTCTTTTTTGTCAAGGACAACGGTGTCGGATTTGACATGGCCTTCTCGCACAAG
CTTTTTGGCACCTTCGAGCGCCTTCATTCACCGGGAGATTTCGCCGGGACCGGCATCGGGCTGGCCACCGTGAAGCGTGT
CATCGACCGTCACGGCGGCCGTGTCTGGGCTGAAGGCAAATTGAACGAAGGCGCGATGTTCTGCTTTACCCTGGGTCAAC
GCAGCGAATCGGCAACCTGA

Upstream 100 bases:

>100_bases
CACAATACGTAAAGCCGCGGGTGAAGCGGGACTGCGAAAAGATTTCAATCGTGTTCGCTGATCCAGGATTCAGTCAGAAC
GACACACACGGGGAGAGTGC

Downstream 100 bases:

>100_bases
AGGGGCGGGTGCCGCTTTGGCCGATGCGGCTTTCCGCCAGGGACTGCCGCCGCGATATGGATAAGAGATAAGGTGTCAGT
CGAAGCGGTCGTCCTTCACC

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 779; Mature: 779

Protein sequence:

>779_residues
MNRTGSCSITLSGTAQGIIDRKLPAEALCAGGMGDTPLRLLADAIPQIVWMMRADGRYTYFNRRWFDYCGLSLEESLDCG
WPGLVHPDDGPRVAELWAQAFKSGETCEVEYRLRRADGVYRWMLGRAVVQYDAAGLTAHWLGTLTDIDDLKQAAVSLEKD
LSMNRIAGRVARLGGWTIELPDRTLTWSDENCLIHDVAPGYQPTLEEGISYFLPEHRPIVIRYVQDCAEHGTPYEFVLPK
LTAKGRRIWVRSIGEAVRDATGKIIRIQGAFQDISEQKEAEARTLALEAQLLTTLESITDGFFLIDREWKFTFVNGQAER
MLKRRREDLMGHTLWQELPEAVGARIEREYRLAAQAQHTTRFEAFHQPLQTWFAFHVYPTEAGLAVYFQDITQRRAEQAQ
LRLLETAVSRLNDMVVITEAEAFSDAGPRIVFVNDAFERHTGYSREEAVGHTSALLWGPKTQQAELDRIRAAMKKWQAVR
AEIVVYTKAGQELWLETEVAPIADESGRFTHWVAVERDITERRQQQEEILSLNGELEERVLLRTAQLAAANKEMESFAYS
VSHDLRSPLNTIHGFSQLLAKAEAENISDKGKHYLDRIGVGVKEMGELIEGLLTLAQLSREQIKSEHVDLSAVARRIEQE
HREREPQRQAQVLIQEGLCVQGDPRLLSAVLQNLLANAWKFTSRQSLTRIEVGCERGSDGDTVFFVKDNGVGFDMAFSHK
LFGTFERLHSPGDFAGTGIGLATVKRVIDRHGGRVWAEGKLNEGAMFCFTLGQRSESAT

Sequences:

>Translated_779_residues
MNRTGSCSITLSGTAQGIIDRKLPAEALCAGGMGDTPLRLLADAIPQIVWMMRADGRYTYFNRRWFDYCGLSLEESLDCG
WPGLVHPDDGPRVAELWAQAFKSGETCEVEYRLRRADGVYRWMLGRAVVQYDAAGLTAHWLGTLTDIDDLKQAAVSLEKD
LSMNRIAGRVARLGGWTIELPDRTLTWSDENCLIHDVAPGYQPTLEEGISYFLPEHRPIVIRYVQDCAEHGTPYEFVLPK
LTAKGRRIWVRSIGEAVRDATGKIIRIQGAFQDISEQKEAEARTLALEAQLLTTLESITDGFFLIDREWKFTFVNGQAER
MLKRRREDLMGHTLWQELPEAVGARIEREYRLAAQAQHTTRFEAFHQPLQTWFAFHVYPTEAGLAVYFQDITQRRAEQAQ
LRLLETAVSRLNDMVVITEAEAFSDAGPRIVFVNDAFERHTGYSREEAVGHTSALLWGPKTQQAELDRIRAAMKKWQAVR
AEIVVYTKAGQELWLETEVAPIADESGRFTHWVAVERDITERRQQQEEILSLNGELEERVLLRTAQLAAANKEMESFAYS
VSHDLRSPLNTIHGFSQLLAKAEAENISDKGKHYLDRIGVGVKEMGELIEGLLTLAQLSREQIKSEHVDLSAVARRIEQE
HREREPQRQAQVLIQEGLCVQGDPRLLSAVLQNLLANAWKFTSRQSLTRIEVGCERGSDGDTVFFVKDNGVGFDMAFSHK
LFGTFERLHSPGDFAGTGIGLATVKRVIDRHGGRVWAEGKLNEGAMFCFTLGQRSESAT
>Mature_779_residues
MNRTGSCSITLSGTAQGIIDRKLPAEALCAGGMGDTPLRLLADAIPQIVWMMRADGRYTYFNRRWFDYCGLSLEESLDCG
WPGLVHPDDGPRVAELWAQAFKSGETCEVEYRLRRADGVYRWMLGRAVVQYDAAGLTAHWLGTLTDIDDLKQAAVSLEKD
LSMNRIAGRVARLGGWTIELPDRTLTWSDENCLIHDVAPGYQPTLEEGISYFLPEHRPIVIRYVQDCAEHGTPYEFVLPK
LTAKGRRIWVRSIGEAVRDATGKIIRIQGAFQDISEQKEAEARTLALEAQLLTTLESITDGFFLIDREWKFTFVNGQAER
MLKRRREDLMGHTLWQELPEAVGARIEREYRLAAQAQHTTRFEAFHQPLQTWFAFHVYPTEAGLAVYFQDITQRRAEQAQ
LRLLETAVSRLNDMVVITEAEAFSDAGPRIVFVNDAFERHTGYSREEAVGHTSALLWGPKTQQAELDRIRAAMKKWQAVR
AEIVVYTKAGQELWLETEVAPIADESGRFTHWVAVERDITERRQQQEEILSLNGELEERVLLRTAQLAAANKEMESFAYS
VSHDLRSPLNTIHGFSQLLAKAEAENISDKGKHYLDRIGVGVKEMGELIEGLLTLAQLSREQIKSEHVDLSAVARRIEQE
HREREPQRQAQVLIQEGLCVQGDPRLLSAVLQNLLANAWKFTSRQSLTRIEVGCERGSDGDTVFFVKDNGVGFDMAFSHK
LFGTFERLHSPGDFAGTGIGLATVKRVIDRHGGRVWAEGKLNEGAMFCFTLGQRSESAT

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=379, Percent_Identity=25.3298153034301, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1788549, Length=370, Percent_Identity=25.6756756756757, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=28.4444444444444, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1788381, Length=282, Percent_Identity=22.6950354609929, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786912, Length=244, Percent_Identity=28.2786885245902, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI145693157, Length=271, Percent_Identity=28.4132841328413, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081921, Length=253, Percent_Identity=25.6916996047431, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1790551, Length=213, Percent_Identity=29.1079812206573, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1789149, Length=270, Percent_Identity=23.3333333333333, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1790861, Length=209, Percent_Identity=29.1866028708134, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790346, Length=209, Percent_Identity=29.6650717703349, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 87866; Mature: 87866

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTGSCSITLSGTAQGIIDRKLPAEALCAGGMGDTPLRLLADAIPQIVWMMRADGRYTY
CCCCCCEEEEECCCCCCHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
FNRRWFDYCGLSLEESLDCGWPGLVHPDDGPRVAELWAQAFKSGETCEVEYRLRRADGVY
ECCHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHCCHH
RWMLGRAVVQYDAAGLTAHWLGTLTDIDDLKQAAVSLEKDLSMNRIAGRVARLGGWTIEL
HHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEC
PDRTLTWSDENCLIHDVAPGYQPTLEEGISYFLPEHRPIVIRYVQDCAEHGTPYEFVLPK
CCCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEECCC
LTAKGRRIWVRSIGEAVRDATGKIIRIQGAFQDISEQKEAEARTLALEAQLLTTLESITD
CCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GFFLIDREWKFTFVNGQAERMLKRRREDLMGHTLWQELPEAVGARIEREYRLAAQAQHTT
CEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFEAFHQPLQTWFAFHVYPTEAGLAVYFQDITQRRAEQAQLRLLETAVSRLNDMVVITEA
HHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
EAFSDAGPRIVFVNDAFERHTGYSREEAVGHTSALLWGPKTQQAELDRIRAAMKKWQAVR
HHHCCCCCEEEEECCHHHHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
AEIVVYTKAGQELWLETEVAPIADESGRFTHWVAVERDITERRQQQEEILSLNGELEERV
EEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHH
LLRTAQLAAANKEMESFAYSVSHDLRSPLNTIHGFSQLLAKAEAENISDKGKHYLDRIGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GVKEMGELIEGLLTLAQLSREQIKSEHVDLSAVARRIEQEHREREPQRQAQVLIQEGLCV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
QGDPRLLSAVLQNLLANAWKFTSRQSLTRIEVGCERGSDGDTVFFVKDNGVGFDMAFSHK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEHHHHHH
LFGTFERLHSPGDFAGTGIGLATVKRVIDRHGGRVWAEGKLNEGAMFCFTLGQRSESAT
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MNRTGSCSITLSGTAQGIIDRKLPAEALCAGGMGDTPLRLLADAIPQIVWMMRADGRYTY
CCCCCCEEEEECCCCCCHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
FNRRWFDYCGLSLEESLDCGWPGLVHPDDGPRVAELWAQAFKSGETCEVEYRLRRADGVY
ECCHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHCCHH
RWMLGRAVVQYDAAGLTAHWLGTLTDIDDLKQAAVSLEKDLSMNRIAGRVARLGGWTIEL
HHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEC
PDRTLTWSDENCLIHDVAPGYQPTLEEGISYFLPEHRPIVIRYVQDCAEHGTPYEFVLPK
CCCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEECCC
LTAKGRRIWVRSIGEAVRDATGKIIRIQGAFQDISEQKEAEARTLALEAQLLTTLESITD
CCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GFFLIDREWKFTFVNGQAERMLKRRREDLMGHTLWQELPEAVGARIEREYRLAAQAQHTT
CEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFEAFHQPLQTWFAFHVYPTEAGLAVYFQDITQRRAEQAQLRLLETAVSRLNDMVVITEA
HHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
EAFSDAGPRIVFVNDAFERHTGYSREEAVGHTSALLWGPKTQQAELDRIRAAMKKWQAVR
HHHCCCCCEEEEECCHHHHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
AEIVVYTKAGQELWLETEVAPIADESGRFTHWVAVERDITERRQQQEEILSLNGELEERV
EEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHH
LLRTAQLAAANKEMESFAYSVSHDLRSPLNTIHGFSQLLAKAEAENISDKGKHYLDRIGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GVKEMGELIEGLLTLAQLSREQIKSEHVDLSAVARRIEQEHREREPQRQAQVLIQEGLCV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
QGDPRLLSAVLQNLLANAWKFTSRQSLTRIEVGCERGSDGDTVFFVKDNGVGFDMAFSHK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEHHHHHH
LFGTFERLHSPGDFAGTGIGLATVKRVIDRHGGRVWAEGKLNEGAMFCFTLGQRSESAT
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]