| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is hpd [H]
Identifier: 91790051
GI number: 91790051
Start: 4431761
End: 4432891
Strand: Direct
Name: hpd [H]
Synonym: Bpro_4213
Alternate gene names: 91790051
Gene position: 4431761-4432891 (Clockwise)
Preceding gene: 91790048
Following gene: 91790052
Centisome position: 85.22
GC content: 60.83
Gene sequence:
>1131_bases ATGAACGCACCCCTATCTTTCGAAACAGGCGCCGCCTGGGACAACCCCATGGGCACCGACGGTTTCGAGTTCATCGAATA CGCCGCGCCGGACCCCCAGGCCATGGGCGCGCTGTTCGAGCGCATGGGCTTCAAGCCGATTGCCAGGCATCGCCATAAAG ATGTGACGCTGTACCGCCAGGGCGGCATCAACTTCATCCTCAATGCCGAGCCCGATTCATTTGCGCAGCGCTTTGCACGC CAGCACGGTCCCAGCGTCTGCGCCATTGCGTTCAGGGTGCGGGATGCCAAGGCCGCTTACGAGCGCGCGATTGCGCTGGG CGCCTGGGGTTATGCCCACACCGCCGGCCCGGGCGAGCTGAACATCCCGGCCATCAAGGGCATTGGCGACTCCATCATCT ATTTCATTGACCGCTGGCGCGGCAAGAACGGCGCCCGGGAAGGCGATATCGGCAACATCGGTTTTTACGATGTTGACTTC GAGCCCCTGCCGGGCGTGAGCGGCGCCGAGGCGCTGAATCCCACGGGCCATGGGCTGACCTACATTGACCACCTGACGCA CAACGTGCACCGCGGCCGCATGGACGAGTGGGCCGGCTTCTACGAGCGCCTGTTCAACTTCCGCGAGATCCGCTACTTCG ACATCGAAGGCCTGGTGACCGGCGTGAAAAGCAAGGCCATGACCAGCCCCTGCGGCAAGATCCGCATCCCGATCAACGAG GAAGGCAATGAGAAAGCCGGCCAGATCCAGGAGTACCTGGACCGTTACCAGGGCGAGGGCATCCAGCACATCGCCATGGG CAGCGGCAATTTGCCAGCCACCGTGGACAAGCTACGCGCCAGCGGCATCAAGCTGCTGGACACGGTAGACACCTACTACG AACTGATCGACAAGCGCATTCCAGGCCATGGCGAAAATGTGGCGGAACTGCACAAGCGAAAAATTTTGGTGGACGGCAAG AAAGGCGCGCTTCTGCTGCAGATCTTCAGTGAAAACCAGCTCGGCCCGATCTTCTTTGAATTCATCCAGCGCAAGGGCGA CGAGGGTTTTGGCGAAGGCAACTTCAAGGCACTGTTCGAAAGCATCGAGCTGGACCAGATGCGCCGAGGGGTTTTGGCGA GTGCACAATAA
Upstream 100 bases:
>100_bases GTCAGTGAATGGACTCCGTAACCAGTCACACGCCAACAGCCGGGCCAGGCCAAGCCGAACCAAGTCAGCCCATCGTCAAT CCAATATTTCTGGAGACTCC
Downstream 100 bases:
>100_bases AGTCCGTCCATTTACCCACCCTCCCGGAGATTGCCATGTCATTTCGTCAGAAACTGCAGCCCCGCCTGGTCGCACTCGGC CTTGTTTCGGCCGCGTCCTT
Product: 4-hydroxyphenylpyruvate dioxygenase
Products: NA
Alternate protein names: 4HPPD; HPD; HPPDase [H]
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MNAPLSFETGAAWDNPMGTDGFEFIEYAAPDPQAMGALFERMGFKPIARHRHKDVTLYRQGGINFILNAEPDSFAQRFAR QHGPSVCAIAFRVRDAKAAYERAIALGAWGYAHTAGPGELNIPAIKGIGDSIIYFIDRWRGKNGAREGDIGNIGFYDVDF EPLPGVSGAEALNPTGHGLTYIDHLTHNVHRGRMDEWAGFYERLFNFREIRYFDIEGLVTGVKSKAMTSPCGKIRIPINE EGNEKAGQIQEYLDRYQGEGIQHIAMGSGNLPATVDKLRASGIKLLDTVDTYYELIDKRIPGHGENVAELHKRKILVDGK KGALLLQIFSENQLGPIFFEFIQRKGDEGFGEGNFKALFESIELDQMRRGVLASAQ
Sequences:
>Translated_376_residues MNAPLSFETGAAWDNPMGTDGFEFIEYAAPDPQAMGALFERMGFKPIARHRHKDVTLYRQGGINFILNAEPDSFAQRFAR QHGPSVCAIAFRVRDAKAAYERAIALGAWGYAHTAGPGELNIPAIKGIGDSIIYFIDRWRGKNGAREGDIGNIGFYDVDF EPLPGVSGAEALNPTGHGLTYIDHLTHNVHRGRMDEWAGFYERLFNFREIRYFDIEGLVTGVKSKAMTSPCGKIRIPINE EGNEKAGQIQEYLDRYQGEGIQHIAMGSGNLPATVDKLRASGIKLLDTVDTYYELIDKRIPGHGENVAELHKRKILVDGK KGALLLQIFSENQLGPIFFEFIQRKGDEGFGEGNFKALFESIELDQMRRGVLASAQ >Mature_376_residues MNAPLSFETGAAWDNPMGTDGFEFIEYAAPDPQAMGALFERMGFKPIARHRHKDVTLYRQGGINFILNAEPDSFAQRFAR QHGPSVCAIAFRVRDAKAAYERAIALGAWGYAHTAGPGELNIPAIKGIGDSIIYFIDRWRGKNGAREGDIGNIGFYDVDF EPLPGVSGAEALNPTGHGLTYIDHLTHNVHRGRMDEWAGFYERLFNFREIRYFDIEGLVTGVKSKAMTSPCGKIRIPINE EGNEKAGQIQEYLDRYQGEGIQHIAMGSGNLPATVDKLRASGIKLLDTVDTYYELIDKRIPGHGENVAELHKRKILVDGK KGALLLQIFSENQLGPIFFEFIQRKGDEGFGEGNFKALFESIELDQMRRGVLASAQ
Specific function: Unknown
COG id: COG3185
COG function: function code ER; 4-hydroxyphenylpyruvate dioxygenase and related hemolysins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 4HPPD family [H]
Homologues:
Organism=Homo sapiens, GI4504477, Length=372, Percent_Identity=26.6129032258064, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI285002264, Length=363, Percent_Identity=26.7217630853994, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI14249394, Length=384, Percent_Identity=24.7395833333333, Blast_Score=82, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17555220, Length=334, Percent_Identity=33.2335329341317, Blast_Score=136, Evalue=2e-32, Organism=Caenorhabditis elegans, GI17550752, Length=204, Percent_Identity=27.9411764705882, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24667510, Length=374, Percent_Identity=31.5508021390374, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI21356105, Length=311, Percent_Identity=33.4405144694534, Blast_Score=137, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005956 - InterPro: IPR004360 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: =1.13.11.27 [H]
Molecular weight: Translated: 41772; Mature: 41772
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPLSFETGAAWDNPMGTDGFEFIEYAAPDPQAMGALFERMGFKPIARHRHKDVTLYRQ CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCEEEEEE GGINFILNAEPDSFAQRFARQHGPSVCAIAFRVRDAKAAYERAIALGAWGYAHTAGPGEL CCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCC NIPAIKGIGDSIIYFIDRWRGKNGAREGDIGNIGFYDVDFEPLPGVSGAEALNPTGHGLT CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH YIDHLTHNVHRGRMDEWAGFYERLFNFREIRYFDIEGLVTGVKSKAMTSPCGKIRIPINE HHHHHHHHHHCCCHHHHHHHHHHHHCHHHEEEEEHHHHHHHHHHHHHCCCCCEEEEECCC EGNEKAGQIQEYLDRYQGEGIQHIAMGSGNLPATVDKLRASGIKLLDTVDTYYELIDKRI CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHC PGHGENVAELHKRKILVDGKKGALLLQIFSENQLGPIFFEFIQRKGDEGFGEGNFKALFE CCCCCCHHHHHHCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH SIELDQMRRGVLASAQ HHHHHHHHHCHHCCCC >Mature Secondary Structure MNAPLSFETGAAWDNPMGTDGFEFIEYAAPDPQAMGALFERMGFKPIARHRHKDVTLYRQ CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCEEEEEE GGINFILNAEPDSFAQRFARQHGPSVCAIAFRVRDAKAAYERAIALGAWGYAHTAGPGEL CCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCC NIPAIKGIGDSIIYFIDRWRGKNGAREGDIGNIGFYDVDFEPLPGVSGAEALNPTGHGLT CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH YIDHLTHNVHRGRMDEWAGFYERLFNFREIRYFDIEGLVTGVKSKAMTSPCGKIRIPINE HHHHHHHHHHCCCHHHHHHHHHHHHCHHHEEEEEHHHHHHHHHHHHHCCCCCEEEEECCC EGNEKAGQIQEYLDRYQGEGIQHIAMGSGNLPATVDKLRASGIKLLDTVDTYYELIDKRI CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHC PGHGENVAELHKRKILVDGKKGALLLQIFSENQLGPIFFEFIQRKGDEGFGEGNFKALFE CCCCCCHHHHHHCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH SIELDQMRRGVLASAQ HHHHHHHHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1572351; 10467142 [H]