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The map label for this gene is cydB [H]

Identifier: 91789955

GI number: 91789955

Start: 4322075

End: 4323106

Strand: Reverse

Name: cydB [H]

Synonym: Bpro_4116

Alternate gene names: 91789955

Gene position: 4323106-4322075 (Counterclockwise)

Preceding gene: 91789956

Following gene: 91789954

Centisome position: 83.13

GC content: 63.37

Gene sequence:

>1032_bases
ATGCTTGATCTTGCCCCTGATCTGACGCAGGCCGCAGGCTGGATGCCGATTGTTTTCCTGGTGGTGATGGGCCTGGCCAT
GCTGGCCTATGTGGTGCTGGACGGCTATGACCTGGGTGTGGGAATGCTGATGCACCGCGCCAGCGACGACGACAAGGACA
CCATGATCGCCAGCATTGGCCCCTTCTGGGATGCCAATGAAACCTGGCTGGTGCTGGGCGTGGGCATTTTGCTCACGGTG
TTTCCGCTGGCGCACGGCGTGATTCTGGGCGCCTTGTATCTGCCGGTGGCGATGATGCTGATCGGGCTGACGCTGCGGGG
CGTGGCCTTCGACTTTCGCGTGAAGGCGCACGCGTCCCACAAGCCGCTGTGGAACCGCATGTTTTACAGCGGCTCGCTGC
TGGCCAGCTGGTCGCAGGGCTACATGCTGGGCGCGCTGATCACCGGCTTTGCCTCCACGGCCTGGGCCGTCGCCTTCAGT
GCCGTGATCGGGCTGGCGCTGGTGGCGGCCTATTGCCTGATGGGCGCGGGCTGGCTCATCATCAAGTCAGAGGGGGAGCT
TCAGCTGCAGGCCGTGCGCTGGGCGCGCCGCAGCCTGCTGTTCACCGTGGCCGGCATTGCCGCGATTTCGATTGCGACGC
CGCTGGTCAGCCCGAGTATTTTTTCCAAGTGGTTTTCCTTTCCGAACATTGTGCTGCTGTTGCCTATTCCTGCGGCAACC
GCCGTGCTGTTTGCGGTGATCTATCGCAGCCTGCAGCGCCTGCCGGTGCGGCTGGCACAGGGCAATGAATATGGCGCCTG
GGTGCCTTTTGGCGCGACGGTGGGCGTGTTCCTGCTGGCGTTTTACGGGCTGGCCTACAGCCTGTTTCCGTGGCTGGTGA
TTGACAGCATGACGATCTGGCAGGCAGCCTCGGCGCCAGAGGCCATGGGCGTGATCCTGGCCGGCGCCGCCGTGGTGCTG
CCGTTGATCATCGGCTACACGGTGTTTGCCTACCGCGTGTTCTGGGGCAAGAGCACCGCGCTGAAATATTGA

Upstream 100 bases:

>100_bases
TACCTGGCGCGCCACAAGACCCATGCCGACCGGCCGTCTGGCGCCGGCATGGAAGACACCCTCAATCCCGTGAGCTACCC
GAAAAAGGAAGGAGCCGCCA

Downstream 100 bases:

>100_bases
GCTGCAGGGCCCCGTCCGGCAGTAGCATCTATCCTGGCCCCCGGTGGGGCAGGAGGGAGTCGACATGGCTGACAGCGCGA
ACGAAACATGGGGCGCCGGC

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MLDLAPDLTQAAGWMPIVFLVVMGLAMLAYVVLDGYDLGVGMLMHRASDDDKDTMIASIGPFWDANETWLVLGVGILLTV
FPLAHGVILGALYLPVAMMLIGLTLRGVAFDFRVKAHASHKPLWNRMFYSGSLLASWSQGYMLGALITGFASTAWAVAFS
AVIGLALVAAYCLMGAGWLIIKSEGELQLQAVRWARRSLLFTVAGIAAISIATPLVSPSIFSKWFSFPNIVLLLPIPAAT
AVLFAVIYRSLQRLPVRLAQGNEYGAWVPFGATVGVFLLAFYGLAYSLFPWLVIDSMTIWQAASAPEAMGVILAGAAVVL
PLIIGYTVFAYRVFWGKSTALKY

Sequences:

>Translated_343_residues
MLDLAPDLTQAAGWMPIVFLVVMGLAMLAYVVLDGYDLGVGMLMHRASDDDKDTMIASIGPFWDANETWLVLGVGILLTV
FPLAHGVILGALYLPVAMMLIGLTLRGVAFDFRVKAHASHKPLWNRMFYSGSLLASWSQGYMLGALITGFASTAWAVAFS
AVIGLALVAAYCLMGAGWLIIKSEGELQLQAVRWARRSLLFTVAGIAAISIATPLVSPSIFSKWFSFPNIVLLLPIPAAT
AVLFAVIYRSLQRLPVRLAQGNEYGAWVPFGATVGVFLLAFYGLAYSLFPWLVIDSMTIWQAASAPEAMGVILAGAAVVL
PLIIGYTVFAYRVFWGKSTALKY
>Mature_343_residues
MLDLAPDLTQAAGWMPIVFLVVMGLAMLAYVVLDGYDLGVGMLMHRASDDDKDTMIASIGPFWDANETWLVLGVGILLTV
FPLAHGVILGALYLPVAMMLIGLTLRGVAFDFRVKAHASHKPLWNRMFYSGSLLASWSQGYMLGALITGFASTAWAVAFS
AVIGLALVAAYCLMGAGWLIIKSEGELQLQAVRWARRSLLFTVAGIAAISIATPLVSPSIFSKWFSFPNIVLLLPIPAAT
AVLFAVIYRSLQRLPVRLAQGNEYGAWVPFGATVGVFLLAFYGLAYSLFPWLVIDSMTIWQAASAPEAMGVILAGAAVVL
PLIIGYTVFAYRVFWGKSTALKY

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787213, Length=365, Percent_Identity=25.7534246575342, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=24.3169398907104, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37038; Mature: 37038

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLAPDLTQAAGWMPIVFLVVMGLAMLAYVVLDGYDLGVGMLMHRASDDDKDTMIASIG
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEECC
PFWDANETWLVLGVGILLTVFPLAHGVILGALYLPVAMMLIGLTLRGVAFDFRVKAHASH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCC
KPLWNRMFYSGSLLASWSQGYMLGALITGFASTAWAVAFSAVIGLALVAAYCLMGAGWLI
CCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IKSEGELQLQAVRWARRSLLFTVAGIAAISIATPLVSPSIFSKWFSFPNIVLLLPIPAAT
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCHHH
AVLFAVIYRSLQRLPVRLAQGNEYGAWVPFGATVGVFLLAFYGLAYSLFPWLVIDSMTIW
HHHHHHHHHHHHHCCCEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QAASAPEAMGVILAGAAVVLPLIIGYTVFAYRVFWGKSTALKY
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLDLAPDLTQAAGWMPIVFLVVMGLAMLAYVVLDGYDLGVGMLMHRASDDDKDTMIASIG
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEECC
PFWDANETWLVLGVGILLTVFPLAHGVILGALYLPVAMMLIGLTLRGVAFDFRVKAHASH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCC
KPLWNRMFYSGSLLASWSQGYMLGALITGFASTAWAVAFSAVIGLALVAAYCLMGAGWLI
CCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IKSEGELQLQAVRWARRSLLFTVAGIAAISIATPLVSPSIFSKWFSFPNIVLLLPIPAAT
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCHHH
AVLFAVIYRSLQRLPVRLAQGNEYGAWVPFGATVGVFLLAFYGLAYSLFPWLVIDSMTIW
HHHHHHHHHHHHHCCCEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QAASAPEAMGVILAGAAVVLPLIIGYTVFAYRVFWGKSTALKY
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]