| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gpmB [H]
Identifier: 91789930
GI number: 91789930
Start: 4300080
End: 4300763
Strand: Direct
Name: gpmB [H]
Synonym: Bpro_4091
Alternate gene names: 91789930
Gene position: 4300080-4300763 (Clockwise)
Preceding gene: 91789929
Following gene: 91789931
Centisome position: 82.69
GC content: 67.54
Gene sequence:
>684_bases ATGACTGAAGCAACCCGCATCATCGCCATTCGCCACGGCGAAACCACCTGGAATGTGGATGCGCGCATTCAGGGCCATCT CGACATTCCGCTCAATGACACCGGGCATGGCCAAGCCAGGCGGATGGCCCAGGCGCTCGTGGATGAACCGATCACCGCAA TCTACACCAGCGATCTGAGCCGCGCCTGGGAAACCGCGCAGCACCTTGCTGGCGCTCTGGGCGTGGAGGTGATCAGGGAA CCGGGCCTGCGCGAACGCTGCTTTGGCGAGTTCGAGGGCAAAACCTTTGCCGAGATCGAGGTGCTGCTGCCCGAGCAGTC ACTGCGCTGGCGCAAACGCGACCCGGAATTCGCCCCACCCGGCGGCGAATCGCTGCTGGACCTGCGCCGCCGCGTGGTGG GCACCGCGGAGCGGCTGGCCGCGGAACACCCCGGCGAGCTGATCGCGCTGGTCGGCCACGGCGGCGTGATGGACATCCTG TACCGCGCGGCCACCCGGCTGGACATCCAGGCGCCCCGCACCTGGGCGCTCGACAACACCGCGATCAACCGCCTGCTCTG GACACCCGAGGGCTTCACGCTGGTGGGCTGGGCCGACACCCAGCACCTGAACGGTGACGCACCCCATGACAACCGATTTA CCGACGACGCCGCCCCCGCTCCCGGCACCACCCACACCCAATGA
Upstream 100 bases:
>100_bases GCCAGTCCCGCGGCCCCTGCTGGGATGAAGAGCTCCCGCGCTCGCGAGACGCTTCGCCTCTGTCGCCTGTCGCAGGGCAC CCGCCAAGGAATCCCGCCCG
Downstream 100 bases:
>100_bases GTGAATCCCCGCACACCATGAGTACATCGTCGTCCCGTTTGTCCGACCTGATAGGCAAGCCCGTCACCGAGGTCGATACA CCCGCCCTCGTCATTGACCT
Product: phosphoglycerate mutase
Products: NA
Alternate protein names: PGAM; Phosphoglyceromutase [H]
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MTEATRIIAIRHGETTWNVDARIQGHLDIPLNDTGHGQARRMAQALVDEPITAIYTSDLSRAWETAQHLAGALGVEVIRE PGLRERCFGEFEGKTFAEIEVLLPEQSLRWRKRDPEFAPPGGESLLDLRRRVVGTAERLAAEHPGELIALVGHGGVMDIL YRAATRLDIQAPRTWALDNTAINRLLWTPEGFTLVGWADTQHLNGDAPHDNRFTDDAAPAPGTTHTQ
Sequences:
>Translated_227_residues MTEATRIIAIRHGETTWNVDARIQGHLDIPLNDTGHGQARRMAQALVDEPITAIYTSDLSRAWETAQHLAGALGVEVIRE PGLRERCFGEFEGKTFAEIEVLLPEQSLRWRKRDPEFAPPGGESLLDLRRRVVGTAERLAAEHPGELIALVGHGGVMDIL YRAATRLDIQAPRTWALDNTAINRLLWTPEGFTLVGWADTQHLNGDAPHDNRFTDDAAPAPGTTHTQ >Mature_226_residues TEATRIIAIRHGETTWNVDARIQGHLDIPLNDTGHGQARRMAQALVDEPITAIYTSDLSRAWETAQHLAGALGVEVIREP GLRERCFGEFEGKTFAEIEVLLPEQSLRWRKRDPEFAPPGGESLLDLRRRVVGTAERLAAEHPGELIALVGHGGVMDILY RAATRLDIQAPRTWALDNTAINRLLWTPEGFTLVGWADTQHLNGDAPHDNRFTDDAAPAPGTTHTQ
Specific function: Unknown
COG id: COG0406
COG function: function code G; Fructose-2,6-bisphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. GpmB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790856, Length=212, Percent_Identity=33.0188679245283, Blast_Score=87, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR023086 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 25131; Mature: 24999
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEATRIIAIRHGETTWNVDARIQGHLDIPLNDTGHGQARRMAQALVDEPITAIYTSDLS CCCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHEEHHHHHH RAWETAQHLAGALGVEVIREPGLRERCFGEFEGKTFAEIEVLLPEQSLRWRKRDPEFAPP HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCCCCCC GGESLLDLRRRVVGTAERLAAEHPGELIALVGHGGVMDILYRAATRLDIQAPRTWALDNT CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEECCHH AINRLLWTPEGFTLVGWADTQHLNGDAPHDNRFTDDAAPAPGTTHTQ HHHHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TEATRIIAIRHGETTWNVDARIQGHLDIPLNDTGHGQARRMAQALVDEPITAIYTSDLS CCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHEEHHHHHH RAWETAQHLAGALGVEVIREPGLRERCFGEFEGKTFAEIEVLLPEQSLRWRKRDPEFAPP HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCCCCCC GGESLLDLRRRVVGTAERLAAEHPGELIALVGHGGVMDILYRAATRLDIQAPRTWALDNT CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEECCHH AINRLLWTPEGFTLVGWADTQHLNGDAPHDNRFTDDAAPAPGTTHTQ HHHHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 14528314 [H]