| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789916
Identifier: 91789916
GI number: 91789916
Start: 4286867
End: 4288060
Strand: Direct
Name: 91789916
Synonym: Bpro_4077
Alternate gene names: NA
Gene position: 4286867-4288060 (Clockwise)
Preceding gene: 91789915
Following gene: 91789917
Centisome position: 82.44
GC content: 60.64
Gene sequence:
>1194_bases ATGAAACTCAAGACTCTTATCGCCGCCATGGCCATCGGCCTGGGCGCCGCCGCTTCGGCCCAGAACACGGGACCGGTCAA GATCGGCTTCATCACCGACATGTCCAGCCTCTACGCGGACATCGACGGCCCGGCCGGCGGTGAAATGATCAGGTGGGCGG CCCAGGACTTCGGCGGCAAGGTGCTGGGACGCCCGATTGAAGTGCTGACGGCCGACCACCAGAACAAGGCCGACGTGGCC AGCTCCAAGGCCCGCGAGTGGATCGACAAGGACGGCCTGTCCGCGCTGATCGGCGGCACCAATTCGGGCACGGCACTGGC CATGTCCAAGGTCGCGACTGAAAAGAAACGCCCTTTCATCGTGATTGGGGCTGGCTCTGCCCGCCTGACCAATGAAGATT GCACGCCCTACACCATTCATTACGCCTACGACACGGTGGCGCTGGCCAAGGTCGCTGGCTCGGCGCTGGTCAAGGCCGGC GCCAAGAACTGGTTCTTCCTGACCGCTGACTACGCCTTTGGCCATTCGCTGGAGTCCGATTCCGCCACGGTCGTGAAGGC CAACGGCGGTACCGTGGTGGGCACGGTGCGGCATCCGCTGAACGCTTCCGACTTCTCGGCCTTCCTGCTGCAGGCGCAAA CTTCCAAGGCGCAAATCCTGGGTCTGGCCAATGCCGGCGGTGACTTCACCAACGCCATGAAAGCGGCCAAAGAGTTCGGC ATCACCAAAAGCATGAAGATTGCCGGTCTGCTGGTGTTTATCAACGACGTGCACAGCCTGGGCCTGGCCAACACCGAAGG CCTGCAACTGGCCGACAGCTGGTACTGGAACCAGGACGACGCATCACGCAAATTTGCCAAGCGCTTTTTTGACAAATACA AGCGCATGCCGTCGAGCCTGCAGGCTGCCGACTACTCGGCCGCATCCAACTACCTGAAAGCCGTGCAAACCGCCGGCACC ACGGATGCTGACAAGGTGATGAGCACGCTGAAAACCATGAAGTTTGACGACTTCTACAGCAAGGGCCAGATTCGCGCCGA CGGCCGCATGATTCACGACATGTACCTCTACCAGGTCAAAGGCACCAAAGAATCGAGCACACCGTGGGACTACTACAAGA TGGTGGCCAAGGTTCCCGGTGACCAGGCGTTCACGACGGTTGCCGAGTCCAAATGCGCGCTGGTCAAGAAGTAA
Upstream 100 bases:
>100_bases GCGGTTCACCGCCTGCCTCCCGTTTTCCCCATGCCCCGATTTTTGTCATCCATTTTTGCTTAGCCGGTTCCGATCTCACC ACCTCAAGAAGGAGAATTTC
Downstream 100 bases:
>100_bases GCTGACTACTGGCCGGTCGCGCGTGCGATCGGCCGCTTTTCTGTATTCTCAAGGCAAGAACCTAGAAACGGCAGTTGACC GCTCATTGACCGCTGGCAAG
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: UreA/Short-Chain Amide ABC Transporter; ABC-Type Transporter Periplasmic Component; Branched-Chain Amino Acid ABC Transporter; ABC-Type Transporter Periplasmic; Tat Pathway Signal Sequence Domain-Containing Protein; ABC Transporter; Tat Pathway Signal Sequence Domain Protein; Amino Acid ABC Transporter Periplasmic Protein; Inner-Membrane Translocator; ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MKLKTLIAAMAIGLGAAASAQNTGPVKIGFITDMSSLYADIDGPAGGEMIRWAAQDFGGKVLGRPIEVLTADHQNKADVA SSKAREWIDKDGLSALIGGTNSGTALAMSKVATEKKRPFIVIGAGSARLTNEDCTPYTIHYAYDTVALAKVAGSALVKAG AKNWFFLTADYAFGHSLESDSATVVKANGGTVVGTVRHPLNASDFSAFLLQAQTSKAQILGLANAGGDFTNAMKAAKEFG ITKSMKIAGLLVFINDVHSLGLANTEGLQLADSWYWNQDDASRKFAKRFFDKYKRMPSSLQAADYSAASNYLKAVQTAGT TDADKVMSTLKTMKFDDFYSKGQIRADGRMIHDMYLYQVKGTKESSTPWDYYKMVAKVPGDQAFTTVAESKCALVKK
Sequences:
>Translated_397_residues MKLKTLIAAMAIGLGAAASAQNTGPVKIGFITDMSSLYADIDGPAGGEMIRWAAQDFGGKVLGRPIEVLTADHQNKADVA SSKAREWIDKDGLSALIGGTNSGTALAMSKVATEKKRPFIVIGAGSARLTNEDCTPYTIHYAYDTVALAKVAGSALVKAG AKNWFFLTADYAFGHSLESDSATVVKANGGTVVGTVRHPLNASDFSAFLLQAQTSKAQILGLANAGGDFTNAMKAAKEFG ITKSMKIAGLLVFINDVHSLGLANTEGLQLADSWYWNQDDASRKFAKRFFDKYKRMPSSLQAADYSAASNYLKAVQTAGT TDADKVMSTLKTMKFDDFYSKGQIRADGRMIHDMYLYQVKGTKESSTPWDYYKMVAKVPGDQAFTTVAESKCALVKK >Mature_397_residues MKLKTLIAAMAIGLGAAASAQNTGPVKIGFITDMSSLYADIDGPAGGEMIRWAAQDFGGKVLGRPIEVLTADHQNKADVA SSKAREWIDKDGLSALIGGTNSGTALAMSKVATEKKRPFIVIGAGSARLTNEDCTPYTIHYAYDTVALAKVAGSALVKAG AKNWFFLTADYAFGHSLESDSATVVKANGGTVVGTVRHPLNASDFSAFLLQAQTSKAQILGLANAGGDFTNAMKAAKEFG ITKSMKIAGLLVFINDVHSLGLANTEGLQLADSWYWNQDDASRKFAKRFFDKYKRMPSSLQAADYSAASNYLKAVQTAGT TDADKVMSTLKTMKFDDFYSKGQIRADGRMIHDMYLYQVKGTKESSTPWDYYKMVAKVPGDQAFTTVAESKCALVKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42528; Mature: 42528
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKTLIAAMAIGLGAAASAQNTGPVKIGFITDMSSLYADIDGPAGGEMIRWAAQDFGGK CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHEECCCCCCCHHHHHHHHHCCCC VLGRPIEVLTADHQNKADVASSKAREWIDKDGLSALIGGTNSGTALAMSKVATEKKRPFI CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEE VIGAGSARLTNEDCTPYTIHYAYDTVALAKVAGSALVKAGAKNWFFLTADYAFGHSLESD EEECCCCEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCCCCC SATVVKANGGTVVGTVRHPLNASDFSAFLLQAQTSKAQILGLANAGGDFTNAMKAAKEFG CEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHC ITKSMKIAGLLVFINDVHSLGLANTEGLQLADSWYWNQDDASRKFAKRFFDKYKRMPSSL CCCCHHHHEEEEEEECHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHH QAADYSAASNYLKAVQTAGTTDADKVMSTLKTMKFDDFYSKGQIRADGRMIHDMYLYQVK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCCEEEECCEEEEEEEEEEEE GTKESSTPWDYYKMVAKVPGDQAFTTVAESKCALVKK CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCC >Mature Secondary Structure MKLKTLIAAMAIGLGAAASAQNTGPVKIGFITDMSSLYADIDGPAGGEMIRWAAQDFGGK CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHEECCCCCCCHHHHHHHHHCCCC VLGRPIEVLTADHQNKADVASSKAREWIDKDGLSALIGGTNSGTALAMSKVATEKKRPFI CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEE VIGAGSARLTNEDCTPYTIHYAYDTVALAKVAGSALVKAGAKNWFFLTADYAFGHSLESD EEECCCCEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCCCCC SATVVKANGGTVVGTVRHPLNASDFSAFLLQAQTSKAQILGLANAGGDFTNAMKAAKEFG CEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHC ITKSMKIAGLLVFINDVHSLGLANTEGLQLADSWYWNQDDASRKFAKRFFDKYKRMPSSL CCCCHHHHEEEEEEECHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHH QAADYSAASNYLKAVQTAGTTDADKVMSTLKTMKFDDFYSKGQIRADGRMIHDMYLYQVK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCCEEEECCEEEEEEEEEEEE GTKESSTPWDYYKMVAKVPGDQAFTTVAESKCALVKK CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA