BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is livF [H]

Identifier: 91789915

GI number: 91789915

Start: 4286061

End: 4286765

Strand: Direct

Name: livF [H]

Synonym: Bpro_4076

Alternate gene names: 91789915

Gene position: 4286061-4286765 (Clockwise)

Preceding gene: 91789914

Following gene: 91789916

Centisome position: 82.42

GC content: 62.27

Gene sequence:

>705_bases
ATGACCAAAGAGCTCCTCAAAATCGAAGACCTGCACGCCTGGTACGGCGAGTCGCACATCCTGCATGGCGTGAACCTGAC
CGTGAATGAAGGCGAGGTAGTGACGCTGCTGGGCCGCAATGGCGCCGGCCGCACCACCACTCTGCGCGCCATTGTCGGCA
TGACCGGCGCCCGCAAGGGGTCAATCAGGATCAATGGCGAAGAGGCGATCAAGCTGGCACCGCACAAGGTGGCCCGCCTG
GGAATTGGCTACTGCCCCGAGGAGCGCGGTATTTTCGCCAGCCTGTCGGCCGAAGAAAACCTGATGCTGCCGCCCAACAT
TGCGCCCGGCGGCATGAGTGTTGCCGAGATCTACGCCATGTTTCCAAACCTGAAAGAGCGTGCGGCCAGCCCCGGCACGC
GCCTGTCGGGTGGTGAGCAGCAGATGCTGGCCGTCGCCCGCATTTTGCGCACCGGCGCCCGGCTGTTGCTGCTCGATGAG
ATCTCAGAAGGCCTGGCACCCGTCATCGTGCAGAAGCTCGCCGAGATGATCCTGGCCCTGAAGGCCAAGGGCTACACCAT
CGTGCTGGTCGAGCAGAACTTCCGCTTTGCCGCGCCGCTGGCCGACCGTTTCTATGTCATGGAGCATGGCCGCATCGTCA
AGCAGTTTGCCCAGGCCGAGTTGTCGCAAAACATGGGCATGCTGCAGGAATATTTGGGGGTGTAG

Upstream 100 bases:

>100_bases
GCAGGCTTGGAGCCGCAGGCTCCAGCCCCTCGGGGGCTGAACTTGCTCGGGGCGGCTCTTCGCTGCGATCGTTGACCCCT
TCAGCACGCCGGAGTCCTGC

Downstream 100 bases:

>100_bases
AGCGGTTCACCGCCTGCCTCCCGTTTTCCCCATGCCCCGATTTTTGTCATCCATTTTTGCTTAGCCGGTTCCGATCTCAC
CACCTCAAGAAGGAGAATTT

Product: ABC transporter-like protein

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: LIV-I protein F [H]

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTKELLKIEDLHAWYGESHILHGVNLTVNEGEVVTLLGRNGAGRTTTLRAIVGMTGARKGSIRINGEEAIKLAPHKVARL
GIGYCPEERGIFASLSAEENLMLPPNIAPGGMSVAEIYAMFPNLKERAASPGTRLSGGEQQMLAVARILRTGARLLLLDE
ISEGLAPVIVQKLAEMILALKAKGYTIVLVEQNFRFAAPLADRFYVMEHGRIVKQFAQAELSQNMGMLQEYLGV

Sequences:

>Translated_234_residues
MTKELLKIEDLHAWYGESHILHGVNLTVNEGEVVTLLGRNGAGRTTTLRAIVGMTGARKGSIRINGEEAIKLAPHKVARL
GIGYCPEERGIFASLSAEENLMLPPNIAPGGMSVAEIYAMFPNLKERAASPGTRLSGGEQQMLAVARILRTGARLLLLDE
ISEGLAPVIVQKLAEMILALKAKGYTIVLVEQNFRFAAPLADRFYVMEHGRIVKQFAQAELSQNMGMLQEYLGV
>Mature_233_residues
TKELLKIEDLHAWYGESHILHGVNLTVNEGEVVTLLGRNGAGRTTTLRAIVGMTGARKGSIRINGEEAIKLAPHKVARLG
IGYCPEERGIFASLSAEENLMLPPNIAPGGMSVAEIYAMFPNLKERAASPGTRLSGGEQQMLAVARILRTGARLLLLDEI
SEGLAPVIVQKLAEMILALKAKGYTIVLVEQNFRFAAPLADRFYVMEHGRIVKQFAQAELSQNMGMLQEYLGV

Specific function: Component of the leucine-specific transport system [H]

COG id: COG0410

COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=197, Percent_Identity=27.9187817258883, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=32.0197044334975, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=32.0197044334975, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI47078218, Length=198, Percent_Identity=30.8080808080808, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI27436953, Length=196, Percent_Identity=29.5918367346939, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI45446740, Length=198, Percent_Identity=30.8080808080808, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=26.3414634146341, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI105990541, Length=193, Percent_Identity=27.979274611399, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI150417984, Length=199, Percent_Identity=31.6582914572864, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI116734710, Length=210, Percent_Identity=29.0476190476191, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI9961252, Length=235, Percent_Identity=29.3617021276596, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI9961250, Length=235, Percent_Identity=29.3617021276596, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI4505771, Length=235, Percent_Identity=29.3617021276596, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=26.5765765765766, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI148612844, Length=216, Percent_Identity=27.3148148148148, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI255708477, Length=216, Percent_Identity=27.3148148148148, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI27262624, Length=218, Percent_Identity=26.605504587156, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI27262626, Length=218, Percent_Identity=26.605504587156, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI6005701, Length=198, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI42741659, Length=235, Percent_Identity=26.3829787234043, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI9955963, Length=227, Percent_Identity=25.9911894273128, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=40.2542372881356, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=32.4786324786325, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789672, Length=227, Percent_Identity=30.8370044052863, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=31.0810810810811, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1787029, Length=240, Percent_Identity=28.75, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=29.3877551020408, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788450, Length=220, Percent_Identity=31.3636363636364, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788897, Length=209, Percent_Identity=29.6650717703349, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789864, Length=253, Percent_Identity=26.0869565217391, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789991, Length=244, Percent_Identity=29.9180327868852, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=28.8888888888889, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786253, Length=238, Percent_Identity=29.8319327731092, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=29.4930875576037, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=28.1818181818182, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=27.9279279279279, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI87081791, Length=215, Percent_Identity=28.3720930232558, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788644, Length=244, Percent_Identity=29.5081967213115, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=29.4871794871795, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787712, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790162, Length=225, Percent_Identity=26.2222222222222, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786698, Length=180, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=26.6968325791855, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=25.8373205741627, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=25.3393665158371, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787112, Length=234, Percent_Identity=28.6324786324786, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI87081782, Length=208, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790467, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788210, Length=220, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=28.2296650717703, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=25.2173913043478, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994997, Length=231, Percent_Identity=26.8398268398268, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790544, Length=236, Percent_Identity=24.5762711864407, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789032, Length=215, Percent_Identity=26.5116279069767, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787113, Length=207, Percent_Identity=29.951690821256, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790534, Length=201, Percent_Identity=29.8507462686567, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788472, Length=202, Percent_Identity=27.2277227722772, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786563, Length=213, Percent_Identity=24.8826291079812, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=24.5192307692308, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=211, Percent_Identity=32.2274881516588, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=30.2439024390244, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=221, Percent_Identity=26.6968325791855, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71996550, Length=233, Percent_Identity=26.6094420600858, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=237, Percent_Identity=24.4725738396624, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=215, Percent_Identity=26.046511627907, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=205, Percent_Identity=26.3414634146341, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=215, Percent_Identity=26.9767441860465, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24666092, Length=213, Percent_Identity=30.0469483568075, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648314, Length=212, Percent_Identity=28.3018867924528, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=27.5555555555556, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221512771, Length=226, Percent_Identity=26.5486725663717, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28573573, Length=233, Percent_Identity=25.7510729613734, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28573571, Length=233, Percent_Identity=25.7510729613734, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28574150, Length=217, Percent_Identity=27.6497695852535, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007328, Length=217, Percent_Identity=27.6497695852535, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221500365, Length=218, Percent_Identity=26.605504587156, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007184, Length=218, Percent_Identity=26.605504587156, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI85725262, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17136662, Length=216, Percent_Identity=27.3148148148148, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357907, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650855, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24650853, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19920532, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580930, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45550390, Length=222, Percent_Identity=25.2252252252252, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25479; Mature: 25348

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKELLKIEDLHAWYGESHILHGVNLTVNEGEVVTLLGRNGAGRTTTLRAIVGMTGARKG
CCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC
SIRINGEEAIKLAPHKVARLGIGYCPEERGIFASLSAEENLMLPPNIAPGGMSVAEIYAM
CEEECCCHHEEECHHHHHHHCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCHHHHHHHH
FPNLKERAASPGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQKLAEMILAL
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHCCHHHHHHHHHHHHHHHH
KAKGYTIVLVEQNFRFAAPLADRFYVMEHGRIVKQFAQAELSQNMGMLQEYLGV
HCCCEEEEEEECCCEEECCHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKELLKIEDLHAWYGESHILHGVNLTVNEGEVVTLLGRNGAGRTTTLRAIVGMTGARKG
CCHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC
SIRINGEEAIKLAPHKVARLGIGYCPEERGIFASLSAEENLMLPPNIAPGGMSVAEIYAM
CEEECCCHHEEECHHHHHHHCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCHHHHHHHH
FPNLKERAASPGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQKLAEMILAL
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHCCHHHHHHHHHHHHHHHH
KAKGYTIVLVEQNFRFAAPLADRFYVMEHGRIVKQFAQAELSQNMGMLQEYLGV
HCCCEEEEEEECCCEEECCHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2195019; 8041620; 9278503 [H]