| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yoaE [H]
Identifier: 91789872
GI number: 91789872
Start: 4232531
End: 4234648
Strand: Direct
Name: yoaE [H]
Synonym: Bpro_4032
Alternate gene names: 91789872
Gene position: 4232531-4234648 (Clockwise)
Preceding gene: 91789866
Following gene: 91789873
Centisome position: 81.39
GC content: 66.01
Gene sequence:
>2118_bases ATGCGCAATACCATCAGCATCTCCCCTAGCGTTAGTTTCGTGCGGGCTGACAGTCAGACCGTCCAGGTGCGCGGCGCTTG CCCGCATGACTGCCCCGACACCTGCTCGCTGCTGACGACCGTGGAAAACGGCGTGGCCGTCAAGGTGCACGGCAACCCCG AGCACCCGCAAACCGGCGGCGTGCTGTGCAACAAGGTCTCACGCTACACCGAGCGCACCTACCACCCCGAGCGCCTGCTG CAGCCGCAAAAGCGTGTGGGGCCCAAGGGCTCGGGCCAATTCGAGCCGGTGAGCTGGGAGGCGGCGCTCACCGACATTGC CGCGCGCCTGAAGGCCATCGCCGCGCGCAACCCCGAGGCCATCGTGCCTTACAGCTACGCCGGCACCATGGGCCAGGTGC AGAGCGAAAGCATGGCGGCGCGCTTCTTCAACCGTCTCGGCGCCTCGTTTCTGGACCGCACGATTTGCGCGACGGCGGGC GGCGAAGGCTTCACGCAGACGCTGGGCGGCAAGGTCGGCATGCGGGTGGAGTTTTTTGCCGAATCGAAACTCATCATCAT CTGGGGCAGCAACTCGATTGGCAGCAACCTGCATTTCTGGCGCTATGCGCAGCAGGCCAAACGCGATGGCGCCCGGCTGG TGTGCATTGATCCGCGCAAGAGTGAGACCGCCGAAAAATGCCACGAACACATCGCGCTGCTGCCCGGCACCGACGCGGCG CTGGCGCTGGCGCTGATGCACGAGCTGATCACCCACGACTGGCTGGACCATGACTATATTGCCCGCCACACGCTGGGCTG GCAGGCGCTGAAGGAACGCGCGCTGCAATGGCCGCCCGAGCGCGCCGCCGAGGTGTGCCGCGTGCCGGTTGAGCAGATCA GGGCCTTGGCCCGCGACTACGGCCAGTGTTTTACCGACCGGCAACCCGCGGCGATTCGCCTGAACTACGGCATGCAGCGC GTGCGCGGCGGCGGCAATGCGGCCCGCGCGGTGGCCTGCCTGCCGGCGCTGATTGGCGCCTGGCGGCACCGCGCCGGCGG CGTGCTGCTGAGCAGTTCAGGGCAGTTTCCGGTGGACAAGGCCGCGCTGCAACGGCCTGAACTGCTAGCCGGCCGCCAGC CGCGAACCATCAACATGAGCACGATTGGCAATGCGCTGCTCGCAAAAACTTCCGCCCAGTTCGGCCCGAAAATCGAGGCG CTGATCGTCTACAACAGCAACCCGGTGGCGGTCGCGCCCGAATCCGGCAAGGTGGTGCAGGGCTTTGCGCGTGAAGACCT GTTCACCGTGGTACTGGAGCACTTCAAGACCGACACCGCCGACTACGCCGACTACCTGCTGCCCGCCACCACGCAGCTGG AGCACTGGGATGTGCACAGCGCCTACGGCCACACCGACGCGCTGCTCAACCGCCCTGCCATCGCGCCGCTCGGCCTGGCC AAGCCCAACACCCAGATCTTTCGCGAACTGGCGGCCCACATGGGCTTTATCGAGCCCTGCTTTTCCGAGGACGATGAGAC CTTGTGCCGCACCGTCTATGGTGACAAGGTCGACTTCCGGCAACTGCTGGACAAGGGCTTTGTCACGCTGAATTTGCCCG ATGCACCGTTCGCTGAGGGCAACTTTCCCACGCCATCGGGCCGCTGCGAGTTTTTCAGCGAGCGGCTGCAAGCCATGGGC CTGGACGGCCTGCCCGACCACGTGCCCAACTACGAAACCCTGGGCACATCAGAGCAGTACCCGCTGGCCATGATCTCGCC GCCCGCGCGCAACTTTCTCAACTCCAGCTTTGTCAATGTGAAAAGCCTGCGCAACATCGAGGGCGAGCCGGTGCTGGAGA TGCATGCCGACGACGCGGCAGCGCGCGGCATCAGCAGCGGCGCCGTCGTCACGGTGTTCAATGCCCGCGGTGAATACCGC GTCAAGGCCGAGGTGTCGGCGCGCGCCCGTCCCGGCGTGGTCAATGGCCTGGGCATCTGGTGGCGCAAGCTGGGGCTCGA CGGCACCAACGTCAACCAGCTCACCAGCCAGCACCTGACCGACCTGGGCCGTGGGCCGGTGTTTTACGACTGCCTGGTTG AAGTCCAGGCCGGCCAGCCCGGGGAGCCTGTGGTGTGA
Upstream 100 bases:
>100_bases CCCGAGCCAGGGCTTTCAGCACTTGCCCGCCGTTTTTGATCACAGACATGAATTACCCTTTTCCTGATTGCCGATATGGC TGTCAATATAGAGTTACACC
Downstream 100 bases:
>100_bases AAACCCGGGTGGCCCAAGTGGCCCTCACCTGGCCCGCCATCCGGGCCACCGCCATGGCGGCCATCGCCGCCCTGGGCCTG TCGGGCTGCACCGGTATCGG
Product: molybdopterin oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MRNTISISPSVSFVRADSQTVQVRGACPHDCPDTCSLLTTVENGVAVKVHGNPEHPQTGGVLCNKVSRYTERTYHPERLL QPQKRVGPKGSGQFEPVSWEAALTDIAARLKAIAARNPEAIVPYSYAGTMGQVQSESMAARFFNRLGASFLDRTICATAG GEGFTQTLGGKVGMRVEFFAESKLIIIWGSNSIGSNLHFWRYAQQAKRDGARLVCIDPRKSETAEKCHEHIALLPGTDAA LALALMHELITHDWLDHDYIARHTLGWQALKERALQWPPERAAEVCRVPVEQIRALARDYGQCFTDRQPAAIRLNYGMQR VRGGGNAARAVACLPALIGAWRHRAGGVLLSSSGQFPVDKAALQRPELLAGRQPRTINMSTIGNALLAKTSAQFGPKIEA LIVYNSNPVAVAPESGKVVQGFAREDLFTVVLEHFKTDTADYADYLLPATTQLEHWDVHSAYGHTDALLNRPAIAPLGLA KPNTQIFRELAAHMGFIEPCFSEDDETLCRTVYGDKVDFRQLLDKGFVTLNLPDAPFAEGNFPTPSGRCEFFSERLQAMG LDGLPDHVPNYETLGTSEQYPLAMISPPARNFLNSSFVNVKSLRNIEGEPVLEMHADDAAARGISSGAVVTVFNARGEYR VKAEVSARARPGVVNGLGIWWRKLGLDGTNVNQLTSQHLTDLGRGPVFYDCLVEVQAGQPGEPVV
Sequences:
>Translated_705_residues MRNTISISPSVSFVRADSQTVQVRGACPHDCPDTCSLLTTVENGVAVKVHGNPEHPQTGGVLCNKVSRYTERTYHPERLL QPQKRVGPKGSGQFEPVSWEAALTDIAARLKAIAARNPEAIVPYSYAGTMGQVQSESMAARFFNRLGASFLDRTICATAG GEGFTQTLGGKVGMRVEFFAESKLIIIWGSNSIGSNLHFWRYAQQAKRDGARLVCIDPRKSETAEKCHEHIALLPGTDAA LALALMHELITHDWLDHDYIARHTLGWQALKERALQWPPERAAEVCRVPVEQIRALARDYGQCFTDRQPAAIRLNYGMQR VRGGGNAARAVACLPALIGAWRHRAGGVLLSSSGQFPVDKAALQRPELLAGRQPRTINMSTIGNALLAKTSAQFGPKIEA LIVYNSNPVAVAPESGKVVQGFAREDLFTVVLEHFKTDTADYADYLLPATTQLEHWDVHSAYGHTDALLNRPAIAPLGLA KPNTQIFRELAAHMGFIEPCFSEDDETLCRTVYGDKVDFRQLLDKGFVTLNLPDAPFAEGNFPTPSGRCEFFSERLQAMG LDGLPDHVPNYETLGTSEQYPLAMISPPARNFLNSSFVNVKSLRNIEGEPVLEMHADDAAARGISSGAVVTVFNARGEYR VKAEVSARARPGVVNGLGIWWRKLGLDGTNVNQLTSQHLTDLGRGPVFYDCLVEVQAGQPGEPVV >Mature_705_residues MRNTISISPSVSFVRADSQTVQVRGACPHDCPDTCSLLTTVENGVAVKVHGNPEHPQTGGVLCNKVSRYTERTYHPERLL QPQKRVGPKGSGQFEPVSWEAALTDIAARLKAIAARNPEAIVPYSYAGTMGQVQSESMAARFFNRLGASFLDRTICATAG GEGFTQTLGGKVGMRVEFFAESKLIIIWGSNSIGSNLHFWRYAQQAKRDGARLVCIDPRKSETAEKCHEHIALLPGTDAA LALALMHELITHDWLDHDYIARHTLGWQALKERALQWPPERAAEVCRVPVEQIRALARDYGQCFTDRQPAAIRLNYGMQR VRGGGNAARAVACLPALIGAWRHRAGGVLLSSSGQFPVDKAALQRPELLAGRQPRTINMSTIGNALLAKTSAQFGPKIEA LIVYNSNPVAVAPESGKVVQGFAREDLFTVVLEHFKTDTADYADYLLPATTQLEHWDVHSAYGHTDALLNRPAIAPLGLA KPNTQIFRELAAHMGFIEPCFSEDDETLCRTVYGDKVDFRQLLDKGFVTLNLPDAPFAEGNFPTPSGRCEFFSERLQAMG LDGLPDHVPNYETLGTSEQYPLAMISPPARNFLNSSFVNVKSLRNIEGEPVLEMHADDAAARGISSGAVVTVFNARGEYR VKAEVSARARPGVVNGLGIWWRKLGLDGTNVNQLTSQHLTDLGRGPVFYDCLVEVQAGQPGEPVV
Specific function: Terminal Reductase During Anaerobic Growth On Various Sulfoxide And N-Oxide Compounds (By Similarity). [C]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI171474008, Length=783, Percent_Identity=25.4150702426565, Blast_Score=171, Evalue=1e-43, Organism=Escherichia coli, GI87081797, Length=785, Percent_Identity=25.9872611464968, Blast_Score=169, Evalue=5e-43, Organism=Escherichia coli, GI1787870, Length=772, Percent_Identity=24.8704663212435, Blast_Score=167, Evalue=3e-42, Organism=Escherichia coli, GI3868721, Length=721, Percent_Identity=25.7975034674064, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI145693196, Length=655, Percent_Identity=24.7328244274809, Blast_Score=126, Evalue=6e-30, Organism=Escherichia coli, GI87081994, Length=682, Percent_Identity=24.1935483870968, Blast_Score=109, Evalue=7e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 77040; Mature: 77040
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNTISISPSVSFVRADSQTVQVRGACPHDCPDTCSLLTTVENGVAVKVHGNPEHPQTGG CCCEEECCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCC VLCNKVSRYTERTYHPERLLQPQKRVGPKGSGQFEPVSWEAALTDIAARLKAIAARNPEA HHHHHHHHHHHHCCCHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE IVPYSYAGTMGQVQSESMAARFFNRLGASFLDRTICATAGGEGFTQTLGGKVGMRVEFFA EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEE ESKLIIIWGSNSIGSNLHFWRYAQQAKRDGARLVCIDPRKSETAEKCHEHIALLPGTDAA CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCEEECCCCHHH LALALMHELITHDWLDHDYIARHTLGWQALKERALQWPPERAAEVCRVPVEQIRALARDY HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH GQCFTDRQPAAIRLNYGMQRVRGGGNAARAVACLPALIGAWRHRAGGVLLSSSGQFPVDK HHHHCCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHH AALQRPELLAGRQPRTINMSTIGNALLAKTSAQFGPKIEALIVYNSNPVAVAPESGKVVQ HHHCCCHHHCCCCCCEEEHHHHCCHHHHHCCHHCCCCEEEEEEECCCCEEECCCCCCHHH GFAREDLFTVVLEHFKTDTADYADYLLPATTQLEHWDVHSAYGHTDALLNRPAIAPLGLA HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCC KPNTQIFRELAAHMGFIEPCFSEDDETLCRTVYGDKVDFRQLLDKGFVTLNLPDAPFAEG CCCHHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCCC NFPTPSGRCEFFSERLQAMGLDGLPDHVPNYETLGTSEQYPLAMISPPARNFLNSSFVNV CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCHHHH KSLRNIEGEPVLEMHADDAAARGISSGAVVTVFNARGEYRVKAEVSARARPGVVNGLGIW HHHHCCCCCCEEEECCCHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHH WRKLGLDGTNVNQLTSQHLTDLGRGPVFYDCLVEVQAGQPGEPVV HHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC >Mature Secondary Structure MRNTISISPSVSFVRADSQTVQVRGACPHDCPDTCSLLTTVENGVAVKVHGNPEHPQTGG CCCEEECCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCC VLCNKVSRYTERTYHPERLLQPQKRVGPKGSGQFEPVSWEAALTDIAARLKAIAARNPEA HHHHHHHHHHHHCCCHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE IVPYSYAGTMGQVQSESMAARFFNRLGASFLDRTICATAGGEGFTQTLGGKVGMRVEFFA EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEE ESKLIIIWGSNSIGSNLHFWRYAQQAKRDGARLVCIDPRKSETAEKCHEHIALLPGTDAA CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCEEECCCCHHH LALALMHELITHDWLDHDYIARHTLGWQALKERALQWPPERAAEVCRVPVEQIRALARDY HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH GQCFTDRQPAAIRLNYGMQRVRGGGNAARAVACLPALIGAWRHRAGGVLLSSSGQFPVDK HHHHCCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHH AALQRPELLAGRQPRTINMSTIGNALLAKTSAQFGPKIEALIVYNSNPVAVAPESGKVVQ HHHCCCHHHCCCCCCEEEHHHHCCHHHHHCCHHCCCCEEEEEEECCCCEEECCCCCCHHH GFAREDLFTVVLEHFKTDTADYADYLLPATTQLEHWDVHSAYGHTDALLNRPAIAPLGLA HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCC KPNTQIFRELAAHMGFIEPCFSEDDETLCRTVYGDKVDFRQLLDKGFVTLNLPDAPFAEG CCCHHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCCC NFPTPSGRCEFFSERLQAMGLDGLPDHVPNYETLGTSEQYPLAMISPPARNFLNSSFVNV CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCHHHH KSLRNIEGEPVLEMHADDAAARGISSGAVVTVFNARGEYRVKAEVSARARPGVVNGLGIW HHHHCCCCCCEEEECCCHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHH WRKLGLDGTNVNQLTSQHLTDLGRGPVFYDCLVEVQAGQPGEPVV HHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]