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The map label for this gene is rfbH [H]

Identifier: 91789851

GI number: 91789851

Start: 4210084

End: 4211406

Strand: Direct

Name: rfbH [H]

Synonym: Bpro_4011

Alternate gene names: 91789851

Gene position: 4210084-4211406 (Clockwise)

Preceding gene: 91789850

Following gene: 91789852

Centisome position: 80.96

GC content: 57.07

Gene sequence:

>1323_bases
ATGCAAAACGCTAAAAGCCAAGACCTCCGCGACCAGATCGCCAAACTCGTCGATGAGTATGCCGCCATTGCTTTGGCGCC
GCAGCCTTTCCTCCCCGGTGCCTCGGTGGTGCCGCCTTCCGGCAAGGTCATCGGTGCCGAAGAGCTCAAAAACATGGTCG
AAGCCTCGCTCGACGGTTGGCTGACCACGGGCCGCTTCAACACCGAATTCGAGAAAAAGCTCGCCGCCTTCATCGGCGTC
AAGCACCTGATTACCGTCAACTCGGGCTCGTCGGCCAACCTCGTGGCATTCAGCACCCTGACCTCGCCCAAACTAGGCGA
CCGAGCCATCAAGCAGGGCGACGAAGTTATCGGTGTGGCGGCAGGCTTTCCCACCACGGTTAACCCCATTCTTCAGTTTG
GTGCTGTACCGGTGTTTGTGGATGTGGACCGCCTCACGCATAACATCGACGCCAGCAAGATCGAAGCCGCCATTGGCCCC
AAGACCAAAGCCATCATGCTGGCCCACTCACTGGGCAACCCCTTCAACCTTGATGTAGTTTCTGCATTGTGCAAAAAGTA
CAAACTGTGGCTGGTGGAAGATTGCTGCGATGCCTTGGGCACCACCTATCGTGGCCAGATGGTTGGCACTTTCGGCGACA
TTGCCACCCTGAGCTTTTACCCGGCGCACCACATCACCATGGGTGAAGGCGGTGCGGTATTTACCAACAACGAAGAACTC
AAAACCATTGCGGAGAGCTTCCGCGACTGGGGGCGTGACTGCTATTGCCCACCTGGTAAGGACAACACCTGTGGCAAACG
CTTTTGCTGGAAGCTGGGTGATCTGCCCGAGGGTTACGACCACAAGTACACCTACAGCCACTTGGGTTACAACCTCAAAA
TCACCGACATGCAGGCCGCCTGCGGACTGGCTCAGTTGGACAAGGCACCGCAATTCATCCAGGCCCGCAAGGACAACTTT
GCTTTCCTGAAAGAGCGCCTGAAAGACTGCGAAGAATTTGTGAACCTCCCCGAGCCGACCGAACATTCCGACCCCTCGTG
GTTCGGGTTCCCGATCACCTTGAAAGAAAATTGCCCGGTCACGCGACTGGACTTGCTGACCTACCTGGACCAGAACAAGG
TCGGTACGCGCCTCCTGTTTGCCGGCAACCTGACGCGCCAGCCCTACATGAGCGGGGCCAAATACCGTATCAGTGGCGAT
CTGACCAATACCGACAACGTGATGAACAACACCTTCTGGATCGGTGTTCAACCCTCGCTGACGCCCGCCATGCTGGAATT
CGCGGCCAGCAAGATCGAGAGCTATCTCGGTGTGAACTTCTGA

Upstream 100 bases:

>100_bases
TCGAATGGTCCAAGCAGCGCCAGGCGGGTGCTGACATCCGCGAGCTGACCTTGGCCCAGATACACTCTTATCAAACATTG
ACCGAAAACTGATCAACACG

Downstream 100 bases:

>100_bases
GTATTGCCCGCGATGATTTCTCAGAATTCACTTATGAATCGGGGTAAGTTGTTCCACCAACTGGAGCCACTTCTACCTTC
TCTTGGTTCGAGAAAGAACT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQNAKSQDLRDQIAKLVDEYAAIALAPQPFLPGASVVPPSGKVIGAEELKNMVEASLDGWLTTGRFNTEFEKKLAAFIGV
KHLITVNSGSSANLVAFSTLTSPKLGDRAIKQGDEVIGVAAGFPTTVNPILQFGAVPVFVDVDRLTHNIDASKIEAAIGP
KTKAIMLAHSLGNPFNLDVVSALCKKYKLWLVEDCCDALGTTYRGQMVGTFGDIATLSFYPAHHITMGEGGAVFTNNEEL
KTIAESFRDWGRDCYCPPGKDNTCGKRFCWKLGDLPEGYDHKYTYSHLGYNLKITDMQAACGLAQLDKAPQFIQARKDNF
AFLKERLKDCEEFVNLPEPTEHSDPSWFGFPITLKENCPVTRLDLLTYLDQNKVGTRLLFAGNLTRQPYMSGAKYRISGD
LTNTDNVMNNTFWIGVQPSLTPAMLEFAASKIESYLGVNF

Sequences:

>Translated_440_residues
MQNAKSQDLRDQIAKLVDEYAAIALAPQPFLPGASVVPPSGKVIGAEELKNMVEASLDGWLTTGRFNTEFEKKLAAFIGV
KHLITVNSGSSANLVAFSTLTSPKLGDRAIKQGDEVIGVAAGFPTTVNPILQFGAVPVFVDVDRLTHNIDASKIEAAIGP
KTKAIMLAHSLGNPFNLDVVSALCKKYKLWLVEDCCDALGTTYRGQMVGTFGDIATLSFYPAHHITMGEGGAVFTNNEEL
KTIAESFRDWGRDCYCPPGKDNTCGKRFCWKLGDLPEGYDHKYTYSHLGYNLKITDMQAACGLAQLDKAPQFIQARKDNF
AFLKERLKDCEEFVNLPEPTEHSDPSWFGFPITLKENCPVTRLDLLTYLDQNKVGTRLLFAGNLTRQPYMSGAKYRISGD
LTNTDNVMNNTFWIGVQPSLTPAMLEFAASKIESYLGVNF
>Mature_440_residues
MQNAKSQDLRDQIAKLVDEYAAIALAPQPFLPGASVVPPSGKVIGAEELKNMVEASLDGWLTTGRFNTEFEKKLAAFIGV
KHLITVNSGSSANLVAFSTLTSPKLGDRAIKQGDEVIGVAAGFPTTVNPILQFGAVPVFVDVDRLTHNIDASKIEAAIGP
KTKAIMLAHSLGNPFNLDVVSALCKKYKLWLVEDCCDALGTTYRGQMVGTFGDIATLSFYPAHHITMGEGGAVFTNNEEL
KTIAESFRDWGRDCYCPPGKDNTCGKRFCWKLGDLPEGYDHKYTYSHLGYNLKITDMQAACGLAQLDKAPQFIQARKDNF
AFLKERLKDCEEFVNLPEPTEHSDPSWFGFPITLKENCPVTRLDLLTYLDQNKVGTRLLFAGNLTRQPYMSGAKYRISGD
LTNTDNVMNNTFWIGVQPSLTPAMLEFAASKIESYLGVNF

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=356, Percent_Identity=32.0224719101124, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI2367285, Length=208, Percent_Identity=36.0576923076923, Blast_Score=112, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 48350; Mature: 48350

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNAKSQDLRDQIAKLVDEYAAIALAPQPFLPGASVVPPSGKVIGAEELKNMVEASLDGW
CCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCC
LTTGRFNTEFEKKLAAFIGVKHLITVNSGSSANLVAFSTLTSPKLGDRAIKQGDEVIGVA
EECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEE
AGFPTTVNPILQFGAVPVFVDVDRLTHNIDASKIEAAIGPKTKAIMLAHSLGNPFNLDVV
CCCCCHHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHH
SALCKKYKLWLVEDCCDALGTTYRGQMVGTFGDIATLSFYPAHHITMGEGGAVFTNNEEL
HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCEEEEECCCCEEEECCHHH
KTIAESFRDWGRDCYCPPGKDNTCGKRFCWKLGDLPEGYDHKYTYSHLGYNLKITDMQAA
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEHHHCCEEEEEECHHHH
CGLAQLDKAPQFIQARKDNFAFLKERLKDCEEFVNLPEPTEHSDPSWFGFPITLKENCPV
CCHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCC
TRLDLLTYLDQNKVGTRLLFAGNLTRQPYMSGAKYRISGDLTNTDNVMNNTFWIGVQPSL
HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCC
TPAMLEFAASKIESYLGVNF
CHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQNAKSQDLRDQIAKLVDEYAAIALAPQPFLPGASVVPPSGKVIGAEELKNMVEASLDGW
CCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCC
LTTGRFNTEFEKKLAAFIGVKHLITVNSGSSANLVAFSTLTSPKLGDRAIKQGDEVIGVA
EECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEE
AGFPTTVNPILQFGAVPVFVDVDRLTHNIDASKIEAAIGPKTKAIMLAHSLGNPFNLDVV
CCCCCHHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHH
SALCKKYKLWLVEDCCDALGTTYRGQMVGTFGDIATLSFYPAHHITMGEGGAVFTNNEEL
HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCEEEEECCCCEEEECCHHH
KTIAESFRDWGRDCYCPPGKDNTCGKRFCWKLGDLPEGYDHKYTYSHLGYNLKITDMQAA
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEHHHCCEEEEEECHHHH
CGLAQLDKAPQFIQARKDNFAFLKERLKDCEEFVNLPEPTEHSDPSWFGFPITLKENCPV
CCHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCC
TRLDLLTYLDQNKVGTRLLFAGNLTRQPYMSGAKYRISGDLTNTDNVMNNTFWIGVQPSL
HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCC
TPAMLEFAASKIESYLGVNF
CHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]