| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789798
Identifier: 91789798
GI number: 91789798
Start: 4150515
End: 4151297
Strand: Reverse
Name: 91789798
Synonym: Bpro_3958
Alternate gene names: NA
Gene position: 4151297-4150515 (Counterclockwise)
Preceding gene: 91789799
Following gene: 91789797
Centisome position: 79.83
GC content: 63.98
Gene sequence:
>783_bases ATGACCGTCAATGAACTCCCTGTCAAAACCGTTCCCGTCCCGGCTGCGCCTATCCCTGCGATCGGCGCAGCCGTGCCCAA AAGCCAGCAAAAAGGCCAGCAGACCAAGGCGGCCATTGTGGATGCGGCCCTGGGCCTGGCCACACAAATTGGCCTGGAGG GCCTGAGCATCGGGGCGCTCGCCGAAGTCATGCACATGAGCAAGTCCGGTGTCTTTGCCCATTTTGGCTCACGCGAGGAA CTGCAGATTTCGGTGGTCCGCGAATACCACAGCCGCTTCGAGGAAGAGGTGTTCTTCCCGGCGTTGCGCGAGGCCAGGGG CCTGCCGCGCCTGCGCGCGCTGTTTCACAACTGGATGAACCGCACTTCGGTCGAAATCGATTCGGGGTGCCTGTACATCA GCGGCGCCGTCGAGTTCGACGACCGGCCGGGACCGGTGCGCGATGCGCTGGCGGGCTCGGTGCGGACCTGGCTGGCCGCG ATGTACCGCGCCGTGGTGCAGGCCAAGGAGGCCGGGCACCTGCAGCGCGATGCCGACGAACAGCAGATGGTTTTCGAGAT CCACGGACTCATTCTGGCGCTGCATTACGAAGCGCGTTTCCTGAAATCCCCCGGCTCCGTCGCCCGCGCCAACGCCGGCT TTGCCAACATCCTGGCGCGTTACGGCAACGATGCTGCGCCGTCGCCGGCAGAGCCATCCCCTGGTGCCTCGCCGACGAAA GCGCCGGAAAAAACGCCGGCAAAAGCCTCCCCCAAAACATCTTCATCTTCCAAACCGGCTTAA
Upstream 100 bases:
>100_bases CTTGTTCTCTATAAACAGACACTCCATCACCCGCAGGCCTTGACCGTCTTTGAATTGTTGCAAAATAGAACGATCGTTCG TTTTATTTTGGCTCAATCCC
Downstream 100 bases:
>100_bases AGCCAAAGGATTCCCCATGCCTCAGTACACCCCACCCCTGCGCGATATGCAATTCGTCATGCACGAAGTGCTCAAGGTCA CCGATGAATTGAAGGTCTTG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Transcriptional Regulatory Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; TetR Family Regulatory
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTVNELPVKTVPVPAAPIPAIGAAVPKSQQKGQQTKAAIVDAALGLATQIGLEGLSIGALAEVMHMSKSGVFAHFGSREE LQISVVREYHSRFEEEVFFPALREARGLPRLRALFHNWMNRTSVEIDSGCLYISGAVEFDDRPGPVRDALAGSVRTWLAA MYRAVVQAKEAGHLQRDADEQQMVFEIHGLILALHYEARFLKSPGSVARANAGFANILARYGNDAAPSPAEPSPGASPTK APEKTPAKASPKTSSSSKPA
Sequences:
>Translated_260_residues MTVNELPVKTVPVPAAPIPAIGAAVPKSQQKGQQTKAAIVDAALGLATQIGLEGLSIGALAEVMHMSKSGVFAHFGSREE LQISVVREYHSRFEEEVFFPALREARGLPRLRALFHNWMNRTSVEIDSGCLYISGAVEFDDRPGPVRDALAGSVRTWLAA MYRAVVQAKEAGHLQRDADEQQMVFEIHGLILALHYEARFLKSPGSVARANAGFANILARYGNDAAPSPAEPSPGASPTK APEKTPAKASPKTSSSSKPA >Mature_259_residues TVNELPVKTVPVPAAPIPAIGAAVPKSQQKGQQTKAAIVDAALGLATQIGLEGLSIGALAEVMHMSKSGVFAHFGSREEL QISVVREYHSRFEEEVFFPALREARGLPRLRALFHNWMNRTSVEIDSGCLYISGAVEFDDRPGPVRDALAGSVRTWLAAM YRAVVQAKEAGHLQRDADEQQMVFEIHGLILALHYEARFLKSPGSVARANAGFANILARYGNDAAPSPAEPSPGASPTKA PEKTPAKASPKTSSSSKPA
Specific function: Unknown
COG id: COG1309
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27776; Mature: 27645
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVNELPVKTVPVPAAPIPAIGAAVPKSQQKGQQTKAAIVDAALGLATQIGLEGLSIGAL CCCCCCCCEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AEVMHMSKSGVFAHFGSREELQISVVREYHSRFEEEVFFPALREARGLPRLRALFHNWMN HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC RTSVEIDSGCLYISGAVEFDDRPGPVRDALAGSVRTWLAAMYRAVVQAKEAGHLQRDADE CCCEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH QQMVFEIHGLILALHYEARFLKSPGSVARANAGFANILARYGNDAAPSPAEPSPGASPTK HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC APEKTPAKASPKTSSSSKPA CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TVNELPVKTVPVPAAPIPAIGAAVPKSQQKGQQTKAAIVDAALGLATQIGLEGLSIGAL CCCCCCCEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AEVMHMSKSGVFAHFGSREELQISVVREYHSRFEEEVFFPALREARGLPRLRALFHNWMN HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC RTSVEIDSGCLYISGAVEFDDRPGPVRDALAGSVRTWLAAMYRAVVQAKEAGHLQRDADE CCCEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH QQMVFEIHGLILALHYEARFLKSPGSVARANAGFANILARYGNDAAPSPAEPSPGASPTK HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC APEKTPAKASPKTSSSSKPA CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA