Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is mmgC [H]

Identifier: 91789797

GI number: 91789797

Start: 4148702

End: 4150498

Strand: Reverse

Name: mmgC [H]

Synonym: Bpro_3957

Alternate gene names: 91789797

Gene position: 4150498-4148702 (Counterclockwise)

Preceding gene: 91789798

Following gene: 91789796

Centisome position: 79.81

GC content: 62.1

Gene sequence:

>1797_bases
ATGCCTCAGTACACCCCACCCCTGCGCGATATGCAATTCGTCATGCACGAAGTGCTCAAGGTCACCGATGAATTGAAGGT
CTTGCCGCGGCATGCCGACATCGACGCCGACACCATCAATGCGGTGCTTGAAGAAGGCGGAAAGTTTGCGGCTGAAGTCA
CCTTCCCGCTCAATATCAGCGGCGACCAGGAAGGCTGCACGCTCGACAAGACCACCCATGAAGTCACACCGCCCAAGGGC
TTCAAGGAAGCTTATGCGAAGTACGTGGAAGGTGGCTGGGCTGCGTTGAGCTGCGACCCCGAGTACGGCGGCCAGGGCCT
GCCCTTTGTCGTCAACCAGTGCTTTTACGAAATGATGAATTCGGCCAACCAGGCCTGGACGATGTACCCGGGCCTGTCGC
ATGGCGCGTATGAAGCCCTGCATGCCCACGGCACTGACGAGCAGAAAAAAACCTACCTGCCCAAGCTGACCAGCGGCGAG
TGGACCGGCACCATGTGCCTGACCGAGCCGCATTGCGGCACCGACCTGGGCCTGCTGCGTACCAAAGCCGAACCCCAGCC
TGACGGCACCTACAAGCTCACCGGCAACAAGATTTTCATCAGCGCCGGCGAGCACGACATGACCAGCAACATCGTGCACC
TGGTGCTGGCCCGCCTGCCCGACGCGCCGCAGGGCAGCAAAGGCATCAGCCTGTTCGCCGTGCCCAAGTTCAACGTCAAC
AAGGATGGCTCGCTCGGCGCGCGCAACGGCATTTACTGCGGCGGTATCGAGCACAAGATGGGCATCCACGGCAACTCCAC
CTGCCAGATGGTGCTGGAAGATGCTGTCGGCACCATGGTGGGCGCGCCCAACAAGGGCCTGGCCGCGATGTTCGTGATGA
TGAACGCCGCACGCCTGGGCGTGGGCAACCAGTCGCTGGGGCTGACCGAAGTGGCTTACCAGAACGCCCTGGCCTATGCC
AAGGACCGCATCCAGATGCGCTCGCTCTCCGGCGTGAAAGCCAAGGACAAACCGGCCGACCCCATCATCGTGCACCCCGA
TGTGCGCAAGATGCTGTTGACCGCCAAGGCCTATGCCGAAGGCGGCCGTGCCCTGGCTATTTACTGCACGCTGCTGCTCG
ACAAGGAACTCCACCACCCCGACGAAAAGGTGCGGAAGGAGTCCGGCGAAATCGTCGCCCTGCTCACGCCCATCGTCAAG
GCCTTCCTGACCGACAACGGCCACATTGCCACCAATGCCTGCATGCAGGTCTTCGGCGGCCACGGCTTCATCAAGGAATG
GGGCATGGAGCAGTTTGTGCGCGACAACCGCATCAACATGATTTATGAGGGCACCAACACCGTCCAGTCGCTGGACCTGC
TGGGCCGCAAGATCCTGGGCAACAACGGCGCCACGCTGAAGAAATTCGGCAAGCTGATCGGCGCCCTGATCGAGGAAGAA
GGCGTCAACGAGAAGATGGCCGAGTTCATCAACCCGCTGGCGTACCTGGCCGACCAGATGACCAAGTTCACGACCGAGCT
CGGCTTCAAGGGTTTCCAGAACCCCGACGAAGTGGGCGCTGCCGCGGTCGACTACCTGCGGGTCGCCGGCCACCTGGTGT
TCGGCTACTTCTGGGCCCGCATGGCACAGGTCGCGCTGCGCGAGATTGCCGCCGGCAACCCCGACAAGTTCTACCTGGCC
AAGCTGCAAACCGCGCGCTTTTACTTCGCCAAGCTCTTCCCCGAGACCGCGACGCTGATGCGCACCGCGCGCTCAGGCAG
CAAGGCGCTGATGGATACCGACGAGGCGCTGGCTTGA

Upstream 100 bases:

>100_bases
CCTGGTGCCTCGCCGACGAAAGCGCCGGAAAAAACGCCGGCAAAAGCCTCCCCCAAAACATCTTCATCTTCCAAACCGGC
TTAAAGCCAAAGGATTCCCC

Downstream 100 bases:

>100_bases
ACCATGCGGGGTCAGCCCCACCCAGTCATCTCCGCTTTATCCCCTCGCCCTCTGGGAGAGGGTTAGGGTGAGGGCTCTCC
GATAAAGGAACACAACATGC

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 597

Protein sequence:

>598_residues
MPQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNISGDQEGCTLDKTTHEVTPPKG
FKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMNSANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGE
WTGTMCLTEPHCGTDLGLLRTKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN
KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLGVGNQSLGLTEVAYQNALAYA
KDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAEGGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVK
AFLTDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE
GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWARMAQVALREIAAGNPDKFYLA
KLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA

Sequences:

>Translated_598_residues
MPQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNISGDQEGCTLDKTTHEVTPPKG
FKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMNSANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGE
WTGTMCLTEPHCGTDLGLLRTKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN
KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLGVGNQSLGLTEVAYQNALAYA
KDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAEGGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVK
AFLTDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE
GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWARMAQVALREIAAGNPDKFYLA
KLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA
>Mature_597_residues
PQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNISGDQEGCTLDKTTHEVTPPKGF
KEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMNSANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGEW
TGTMCLTEPHCGTDLGLLRTKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVNK
DGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLGVGNQSLGLTEVAYQNALAYAK
DRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAEGGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVKA
FLTDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEEG
VNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWARMAQVALREIAAGNPDKFYLAK
LQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=415, Percent_Identity=26.9879518072289, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI7656849, Length=377, Percent_Identity=26.525198938992, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI226958412, Length=398, Percent_Identity=26.3819095477387, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI4557233, Length=424, Percent_Identity=24.5283018867925, Blast_Score=104, Evalue=3e-22,
Organism=Homo sapiens, GI21361497, Length=450, Percent_Identity=24, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI226958414, Length=376, Percent_Identity=27.1276595744681, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI76496475, Length=336, Percent_Identity=28.2738095238095, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI4557235, Length=336, Percent_Identity=27.9761904761905, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI4501857, Length=322, Percent_Identity=26.0869565217391, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI87082384, Length=344, Percent_Identity=26.453488372093, Blast_Score=105, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17533517, Length=424, Percent_Identity=25.7075471698113, Blast_Score=115, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17508101, Length=364, Percent_Identity=25.8241758241758, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17569725, Length=369, Percent_Identity=28.7262872628726, Blast_Score=110, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17534899, Length=370, Percent_Identity=29.1891891891892, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=365, Percent_Identity=25.4794520547945, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71985184, Length=372, Percent_Identity=25.2688172043011, Blast_Score=99, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17538396, Length=385, Percent_Identity=24.4155844155844, Blast_Score=86, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71990804, Length=241, Percent_Identity=27.8008298755187, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=231, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71985192, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17534353, Length=329, Percent_Identity=27.355623100304, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21356377, Length=370, Percent_Identity=27.2972972972973, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24646207, Length=386, Percent_Identity=24.8704663212435, Blast_Score=117, Evalue=3e-26,
Organism=Drosophila melanogaster, GI21355753, Length=376, Percent_Identity=26.5957446808511, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24666513, Length=366, Percent_Identity=24.5901639344262, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI281363737, Length=371, Percent_Identity=25.3369272237197, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24660351, Length=312, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19920834, Length=375, Percent_Identity=24, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 65335; Mature: 65204

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNIS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEC
GDQEGCTLDKTTHEVTPPKGFKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMN
CCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
SANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLLR
CCCCEEEECCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHC
TKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN
CCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLG
CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
VGNQSLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHC
GGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVKAFLTDNGHIATNACMQVFGG
CCCEEEEHHHHHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHCC
HGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE
CCHHHHHCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MAQVALREIAAGNPDKFYLAKLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCC
>Mature Secondary Structure 
PQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNIS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEC
GDQEGCTLDKTTHEVTPPKGFKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMN
CCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
SANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLLR
CCCCEEEECCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHC
TKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN
CCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLG
CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
VGNQSLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHC
GGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVKAFLTDNGHIATNACMQVFGG
CCCEEEEHHHHHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHCC
HGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE
CCHHHHHCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MAQVALREIAAGNPDKFYLAKLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]