| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is mmgC [H]
Identifier: 91789797
GI number: 91789797
Start: 4148702
End: 4150498
Strand: Reverse
Name: mmgC [H]
Synonym: Bpro_3957
Alternate gene names: 91789797
Gene position: 4150498-4148702 (Counterclockwise)
Preceding gene: 91789798
Following gene: 91789796
Centisome position: 79.81
GC content: 62.1
Gene sequence:
>1797_bases ATGCCTCAGTACACCCCACCCCTGCGCGATATGCAATTCGTCATGCACGAAGTGCTCAAGGTCACCGATGAATTGAAGGT CTTGCCGCGGCATGCCGACATCGACGCCGACACCATCAATGCGGTGCTTGAAGAAGGCGGAAAGTTTGCGGCTGAAGTCA CCTTCCCGCTCAATATCAGCGGCGACCAGGAAGGCTGCACGCTCGACAAGACCACCCATGAAGTCACACCGCCCAAGGGC TTCAAGGAAGCTTATGCGAAGTACGTGGAAGGTGGCTGGGCTGCGTTGAGCTGCGACCCCGAGTACGGCGGCCAGGGCCT GCCCTTTGTCGTCAACCAGTGCTTTTACGAAATGATGAATTCGGCCAACCAGGCCTGGACGATGTACCCGGGCCTGTCGC ATGGCGCGTATGAAGCCCTGCATGCCCACGGCACTGACGAGCAGAAAAAAACCTACCTGCCCAAGCTGACCAGCGGCGAG TGGACCGGCACCATGTGCCTGACCGAGCCGCATTGCGGCACCGACCTGGGCCTGCTGCGTACCAAAGCCGAACCCCAGCC TGACGGCACCTACAAGCTCACCGGCAACAAGATTTTCATCAGCGCCGGCGAGCACGACATGACCAGCAACATCGTGCACC TGGTGCTGGCCCGCCTGCCCGACGCGCCGCAGGGCAGCAAAGGCATCAGCCTGTTCGCCGTGCCCAAGTTCAACGTCAAC AAGGATGGCTCGCTCGGCGCGCGCAACGGCATTTACTGCGGCGGTATCGAGCACAAGATGGGCATCCACGGCAACTCCAC CTGCCAGATGGTGCTGGAAGATGCTGTCGGCACCATGGTGGGCGCGCCCAACAAGGGCCTGGCCGCGATGTTCGTGATGA TGAACGCCGCACGCCTGGGCGTGGGCAACCAGTCGCTGGGGCTGACCGAAGTGGCTTACCAGAACGCCCTGGCCTATGCC AAGGACCGCATCCAGATGCGCTCGCTCTCCGGCGTGAAAGCCAAGGACAAACCGGCCGACCCCATCATCGTGCACCCCGA TGTGCGCAAGATGCTGTTGACCGCCAAGGCCTATGCCGAAGGCGGCCGTGCCCTGGCTATTTACTGCACGCTGCTGCTCG ACAAGGAACTCCACCACCCCGACGAAAAGGTGCGGAAGGAGTCCGGCGAAATCGTCGCCCTGCTCACGCCCATCGTCAAG GCCTTCCTGACCGACAACGGCCACATTGCCACCAATGCCTGCATGCAGGTCTTCGGCGGCCACGGCTTCATCAAGGAATG GGGCATGGAGCAGTTTGTGCGCGACAACCGCATCAACATGATTTATGAGGGCACCAACACCGTCCAGTCGCTGGACCTGC TGGGCCGCAAGATCCTGGGCAACAACGGCGCCACGCTGAAGAAATTCGGCAAGCTGATCGGCGCCCTGATCGAGGAAGAA GGCGTCAACGAGAAGATGGCCGAGTTCATCAACCCGCTGGCGTACCTGGCCGACCAGATGACCAAGTTCACGACCGAGCT CGGCTTCAAGGGTTTCCAGAACCCCGACGAAGTGGGCGCTGCCGCGGTCGACTACCTGCGGGTCGCCGGCCACCTGGTGT TCGGCTACTTCTGGGCCCGCATGGCACAGGTCGCGCTGCGCGAGATTGCCGCCGGCAACCCCGACAAGTTCTACCTGGCC AAGCTGCAAACCGCGCGCTTTTACTTCGCCAAGCTCTTCCCCGAGACCGCGACGCTGATGCGCACCGCGCGCTCAGGCAG CAAGGCGCTGATGGATACCGACGAGGCGCTGGCTTGA
Upstream 100 bases:
>100_bases CCTGGTGCCTCGCCGACGAAAGCGCCGGAAAAAACGCCGGCAAAAGCCTCCCCCAAAACATCTTCATCTTCCAAACCGGC TTAAAGCCAAAGGATTCCCC
Downstream 100 bases:
>100_bases ACCATGCGGGGTCAGCCCCACCCAGTCATCTCCGCTTTATCCCCTCGCCCTCTGGGAGAGGGTTAGGGTGAGGGCTCTCC GATAAAGGAACACAACATGC
Product: acyl-CoA dehydrogenase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 598; Mature: 597
Protein sequence:
>598_residues MPQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNISGDQEGCTLDKTTHEVTPPKG FKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMNSANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGE WTGTMCLTEPHCGTDLGLLRTKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLGVGNQSLGLTEVAYQNALAYA KDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAEGGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVK AFLTDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWARMAQVALREIAAGNPDKFYLA KLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA
Sequences:
>Translated_598_residues MPQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNISGDQEGCTLDKTTHEVTPPKG FKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMNSANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGE WTGTMCLTEPHCGTDLGLLRTKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLGVGNQSLGLTEVAYQNALAYA KDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAEGGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVK AFLTDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWARMAQVALREIAAGNPDKFYLA KLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA >Mature_597_residues PQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNISGDQEGCTLDKTTHEVTPPKGF KEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMNSANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGEW TGTMCLTEPHCGTDLGLLRTKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVNK DGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLGVGNQSLGLTEVAYQNALAYAK DRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAEGGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVKA FLTDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEEG VNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWARMAQVALREIAAGNPDKFYLAK LQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA
Specific function: Unknown
COG id: COG1960
COG function: function code I; Acyl-CoA dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501859, Length=415, Percent_Identity=26.9879518072289, Blast_Score=129, Evalue=7e-30, Organism=Homo sapiens, GI7656849, Length=377, Percent_Identity=26.525198938992, Blast_Score=114, Evalue=3e-25, Organism=Homo sapiens, GI226958412, Length=398, Percent_Identity=26.3819095477387, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI4557233, Length=424, Percent_Identity=24.5283018867925, Blast_Score=104, Evalue=3e-22, Organism=Homo sapiens, GI21361497, Length=450, Percent_Identity=24, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI226958414, Length=376, Percent_Identity=27.1276595744681, Blast_Score=102, Evalue=7e-22, Organism=Homo sapiens, GI76496475, Length=336, Percent_Identity=28.2738095238095, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI4557235, Length=336, Percent_Identity=27.9761904761905, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI4501857, Length=322, Percent_Identity=26.0869565217391, Blast_Score=99, Evalue=1e-20, Organism=Escherichia coli, GI87082384, Length=344, Percent_Identity=26.453488372093, Blast_Score=105, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17533517, Length=424, Percent_Identity=25.7075471698113, Blast_Score=115, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17508101, Length=364, Percent_Identity=25.8241758241758, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17569725, Length=369, Percent_Identity=28.7262872628726, Blast_Score=110, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17534899, Length=370, Percent_Identity=29.1891891891892, Blast_Score=105, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17506239, Length=365, Percent_Identity=25.4794520547945, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71985184, Length=372, Percent_Identity=25.2688172043011, Blast_Score=99, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17538396, Length=385, Percent_Identity=24.4155844155844, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71990804, Length=241, Percent_Identity=27.8008298755187, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI32563615, Length=231, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71985192, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17534353, Length=329, Percent_Identity=27.355623100304, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI21356377, Length=370, Percent_Identity=27.2972972972973, Blast_Score=126, Evalue=4e-29, Organism=Drosophila melanogaster, GI24646207, Length=386, Percent_Identity=24.8704663212435, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI21355753, Length=376, Percent_Identity=26.5957446808511, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24666513, Length=366, Percent_Identity=24.5901639344262, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI281363737, Length=371, Percent_Identity=25.3369272237197, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI24660351, Length=312, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI19920834, Length=375, Percent_Identity=24, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006089 - InterPro: IPR006092 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 65335; Mature: 65204
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNIS CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEC GDQEGCTLDKTTHEVTPPKGFKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMN CCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH SANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLLR CCCCEEEECCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHC TKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN CCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLG CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC VGNQSLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAE CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHC GGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVKAFLTDNGHIATNACMQVFGG CCCEEEEHHHHHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHCC HGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE CCHHHHHCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWAR CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH MAQVALREIAAGNPDKFYLAKLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCC >Mature Secondary Structure PQYTPPLRDMQFVMHEVLKVTDELKVLPRHADIDADTINAVLEEGGKFAAEVTFPLNIS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEC GDQEGCTLDKTTHEVTPPKGFKEAYAKYVEGGWAALSCDPEYGGQGLPFVVNQCFYEMMN CCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH SANQAWTMYPGLSHGAYEALHAHGTDEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLLR CCCCEEEECCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHC TKAEPQPDGTYKLTGNKIFISAGEHDMTSNIVHLVLARLPDAPQGSKGISLFAVPKFNVN CCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC KDGSLGARNGIYCGGIEHKMGIHGNSTCQMVLEDAVGTMVGAPNKGLAAMFVMMNAARLG CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC VGNQSLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKPADPIIVHPDVRKMLLTAKAYAE CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHC GGRALAIYCTLLLDKELHHPDEKVRKESGEIVALLTPIVKAFLTDNGHIATNACMQVFGG CCCEEEEHHHHHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHCC HGFIKEWGMEQFVRDNRINMIYEGTNTVQSLDLLGRKILGNNGATLKKFGKLIGALIEEE CCHHHHHCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC GVNEKMAEFINPLAYLADQMTKFTTELGFKGFQNPDEVGAAAVDYLRVAGHLVFGYFWAR CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH MAQVALREIAAGNPDKFYLAKLQTARFYFAKLFPETATLMRTARSGSKALMDTDEALA HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759838; 8969508; 9384377 [H]