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The map label for this gene is potC [H]

Identifier: 91789785

GI number: 91789785

Start: 4134890

End: 4135684

Strand: Reverse

Name: potC [H]

Synonym: Bpro_3945

Alternate gene names: 91789785

Gene position: 4135684-4134890 (Counterclockwise)

Preceding gene: 91789786

Following gene: 91789784

Centisome position: 79.53

GC content: 64.53

Gene sequence:

>795_bases
ATGTCAAAAAACGGTCCCATCGCACTCATCTTCAACGCCCTCGTCATCGCCTTCATGATGGCGCCGCTCGTCATCGTTTG
CGTGGTGGCCTTCACGCCCGAGAACACGCTGACCATTCCCACCACGCATTTTTCGCTGCGCTGGTTCAAGGCGGTGTTTG
CCCATGCCGACTTTGTGCAGTCCTTCAAGAACAGCCTGTGGCTGGCCTTCCTGTCGGCCACGCTGGCCACGGTGCTGGCC
GTGCCGGCGGGGCTGGCCATTGCGCGCCACAGCTTTCCGGGGCGCGACTTCCTCAACGGCCTGTTTCTCTCGCCGCTGAT
CATTCCGCACCTGGTGCTGGGGGTAGCGCTGCTGCGCACCTTTTCGCTGATTGGCGCCACCGGCAGCTTCTTCTGGCTGG
CGCTGGCCCACGTGGTCGTCATCACGCCGTATGCGCTGCGGCTGGTGCTGGCGTCGGTAGAGGGGGGCGACCGCAGCGCG
GAGCAGGCCGCCCTGTCGCTGGGCGCCAGCCAGGCCACGGTGTTCCGGCGCATCACGCTGCCGATGATTTTGCCCGGCGT
GACGGGTGGCTGGCTGCTCGCCTTCATCAACAGCTTTGACGAAGTGACCATGTCGATCTTTGTCACCGCGCCGTCCACCG
TGACGCTGCCGGTGCGCATGTACATGTATGCGACCGAGTCGATTGACCCGCTGATGGCGGCGGTCTCGGCGCTCATGGTC
GCGCTGACGGCAGTCGCCATGCTGGTGCTGGACCGCGTGTACGGCCTCGACAAGATCCTCGTGGGGCACAAATGA

Upstream 100 bases:

>100_bases
CGCTCACGCTGCTGCTGGCCAACCTGGTGCTGATGCTCAGCTACAACCGGGTGCTCGAGCGCTCCTACAAAAAATCAATG
GGTTAAGCGGGGTCTGCACC

Downstream 100 bases:

>100_bases
CCCTGGCCCCTGAAACTAAAACACCCCGTTCCCCAGGAAACACCGTGGCGCTTCTTCAACGCGTGGCCGAAACCGGCCGT
ACCCCGGTGGGCTTTGTGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSKNGPIALIFNALVIAFMMAPLVIVCVVAFTPENTLTIPTTHFSLRWFKAVFAHADFVQSFKNSLWLAFLSATLATVLA
VPAGLAIARHSFPGRDFLNGLFLSPLIIPHLVLGVALLRTFSLIGATGSFFWLALAHVVVITPYALRLVLASVEGGDRSA
EQAALSLGASQATVFRRITLPMILPGVTGGWLLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMV
ALTAVAMLVLDRVYGLDKILVGHK

Sequences:

>Translated_264_residues
MSKNGPIALIFNALVIAFMMAPLVIVCVVAFTPENTLTIPTTHFSLRWFKAVFAHADFVQSFKNSLWLAFLSATLATVLA
VPAGLAIARHSFPGRDFLNGLFLSPLIIPHLVLGVALLRTFSLIGATGSFFWLALAHVVVITPYALRLVLASVEGGDRSA
EQAALSLGASQATVFRRITLPMILPGVTGGWLLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMV
ALTAVAMLVLDRVYGLDKILVGHK
>Mature_263_residues
SKNGPIALIFNALVIAFMMAPLVIVCVVAFTPENTLTIPTTHFSLRWFKAVFAHADFVQSFKNSLWLAFLSATLATVLAV
PAGLAIARHSFPGRDFLNGLFLSPLIIPHLVLGVALLRTFSLIGATGSFFWLALAHVVVITPYALRLVLASVEGGDRSAE
QAALSLGASQATVFRRITLPMILPGVTGGWLLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMVA
LTAVAMLVLDRVYGLDKILVGHK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=215, Percent_Identity=31.1627906976744, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787081, Length=243, Percent_Identity=29.6296296296296, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=30.2631578947368, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786980, Length=212, Percent_Identity=31.1320754716981, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788764, Length=172, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28364; Mature: 28233

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNGPIALIFNALVIAFMMAPLVIVCVVAFTPENTLTIPTTHFSLRWFKAVFAHADFVQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
SFKNSLWLAFLSATLATVLAVPAGLAIARHSFPGRDFLNGLFLSPLIIPHLVLGVALLRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FSLIGATGSFFWLALAHVVVITPYALRLVLASVEGGDRSAEQAALSLGASQATVFRRITL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
PMILPGVTGGWLLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMV
HHHCCCCCHHHHHHHHHHHHHEEEEEEEECCCEEEEHHHHEEHHHCCHHHHHHHHHHHHH
ALTAVAMLVLDRVYGLDKILVGHK
HHHHHHHHHHHHHHCHHHHHCCCC
>Mature Secondary Structure 
SKNGPIALIFNALVIAFMMAPLVIVCVVAFTPENTLTIPTTHFSLRWFKAVFAHADFVQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
SFKNSLWLAFLSATLATVLAVPAGLAIARHSFPGRDFLNGLFLSPLIIPHLVLGVALLRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FSLIGATGSFFWLALAHVVVITPYALRLVLASVEGGDRSAEQAALSLGASQATVFRRITL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
PMILPGVTGGWLLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMV
HHHCCCCCHHHHHHHHHHHHHEEEEEEEECCCEEEEHHHHEEHHHCCHHHHHHHHHHHHH
ALTAVAMLVLDRVYGLDKILVGHK
HHHHHHHHHHHHHHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]