| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789767
Identifier: 91789767
GI number: 91789767
Start: 4119185
End: 4119538
Strand: Direct
Name: 91789767
Synonym: Bpro_3926
Alternate gene names: NA
Gene position: 4119185-4119538 (Clockwise)
Preceding gene: 91789759
Following gene: 91789770
Centisome position: 79.21
GC content: 62.99
Gene sequence:
>354_bases ATGAGCACATTTGACCATGTGGGCCTGATACAGGATATCAATGAAGGCCTCGGGCAGTTTCGCAAGGCGCAACCCGAGGC GATGCAGGGGTTTGGGCAGCTCTCGCGAGCCGCGATGTCGGAGGGCACCCTCAGCGCCAGGCACAAGGAGCTGATGGCCC TGGCGATTGGAGTGACCCAGCACTGCTCGGGCTGCATCGCTTTTCATGTGAAAGCCCTGCACAAACTGGGCTGCACCCGC GCCGAGCTGGAGGAAACGCTGGCCGTGTGCGTGTACATGGGCGGTGGTCCGGCCCTGATGTACACGGCCGAGGCCCTCAA AGCCTGGGAGGCCATGGCGCCAGATCTCACCTGA
Upstream 100 bases:
>100_bases GTTGTACACGACATGATCCACGCATGATCCGCGTCAACACACCCGCAACGATGTCACCTGATACTTGAAAAGGTAGCAAA ACACGGAAGGAAAGCCATCC
Downstream 100 bases:
>100_bases AAACCTGAGCCGTCCGCTGCGCCCGCTGCTCAAGCGGCGCACCGAGCGCGGGCCGTCCACCGATCTTCAGTCCACAAAAA AATCCGGAATGAAATCTTTC
Product: alkylhydroperoxidase AhpD
Products: NA
Alternate protein names: ORF 7 [H]
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MSTFDHVGLIQDINEGLGQFRKAQPEAMQGFGQLSRAAMSEGTLSARHKELMALAIGVTQHCSGCIAFHVKALHKLGCTR AELEETLAVCVYMGGGPALMYTAEALKAWEAMAPDLT
Sequences:
>Translated_117_residues MSTFDHVGLIQDINEGLGQFRKAQPEAMQGFGQLSRAAMSEGTLSARHKELMALAIGVTQHCSGCIAFHVKALHKLGCTR AELEETLAVCVYMGGGPALMYTAEALKAWEAMAPDLT >Mature_116_residues STFDHVGLIQDINEGLGQFRKAQPEAMQGFGQLSRAAMSEGTLSARHKELMALAIGVTQHCSGCIAFHVKALHKLGCTRA ELEETLAVCVYMGGGPALMYTAEALKAWEAMAPDLT
Specific function: Unknown
COG id: COG0599
COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1053 and P.denitrificans COX locus Uncharacterized protein 4 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004675 - InterPro: IPR003779 [H]
Pfam domain/function: PF02627 CMD [H]
EC number: NA
Molecular weight: Translated: 12539; Mature: 12407
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 9.4 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 8.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFDHVGLIQDINEGLGQFRKAQPEAMQGFGQLSRAAMSEGTLSARHKELMALAIGVTQ CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH HCSGCIAFHVKALHKLGCTRAELEETLAVCVYMGGGPALMYTAEALKAWEAMAPDLT HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STFDHVGLIQDINEGLGQFRKAQPEAMQGFGQLSRAAMSEGTLSARHKELMALAIGVTQ CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH HCSGCIAFHVKALHKLGCTRAELEETLAVCVYMGGGPALMYTAEALKAWEAMAPDLT HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2061286 [H]