| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789698
Identifier: 91789698
GI number: 91789698
Start: 4047252
End: 4048238
Strand: Direct
Name: 91789698
Synonym: Bpro_3854
Alternate gene names: NA
Gene position: 4047252-4048238 (Clockwise)
Preceding gene: 91789695
Following gene: 91789699
Centisome position: 77.83
GC content: 59.07
Gene sequence:
>987_bases ATGATCAACCAACTTGTTAAAAAATACCTTTTGGGCGCATGCGTCCTTACGCTGGCGGGTGCGACGTCGCTAGCCAGCGC CCAGCCCTTCCCAAGCAAGCCGGTCAAACTCATCGTGCCCTATCCGGCAGGAGCGCCGGTGGACAACTTTGCACGGGGTT TGGGCGAGGCGCTCACCGGCTTATGGGGGCAACCGGTTATCGTTGACAACCGGCCCGGCGCCAATGAAATCATCGCCGCC TCCTTCGTGGCGAAAGCCCCGGCCGATGGCTATACGCTCTTGCTGGGTTCAGACGCGGCCTTTACGCATAACGCGTTTCT CTATTCCAAGATGCCCTACGACGCAGACAAGGATCTGACCCCGATCACACGGGCCGTTCACTTCAACATGGTGCTGATCA CCAAGGGTGATCTGAAGACGCCAACACTCAAAGACTTTGTGGCCCTGATGAAAAAAGAGGGCCCCAAACACAGCTACGCC TCGGCCGGCAGCGGTGGAACCACGCACCAGGCATTGGAGAGCCTCAAACAGGAAGCCGCGTTTGACATGATCCACGTGCC CTACAAGGGCATTGCTCCGGCCATACAGGACATGCTGGGCGGCAACATCGACGCCATGGTGGCCGGAGCCTCTGCGGCCA TCCCTCACCTGCAAAGTGGCAAGGTCAAGATACTGGCAATTGCCGGGTCCAAGCGTGCCAAGGCGCTGCCGGATGTCCCC ACCTTTGCCGAATCCGGCTACCCCAACGTGATGGCCAACCTCTACCTGGCGCTGGCCGGCCCTGCCGGAACACCGCCCGC CATCGCGAACAAAATCACGGCTGACGTACAGAAGGTGCTGAAAAGCAAGGAGTTCCTCGACCGGTTCGTCGATCCCTACG GCTATGAGCCCATCGGGGACACGCCGCAACAGTTTGAAGCCTTCCTGAAAAAGGACAAAGACGTTTCCGGCAAGCGCATC AAGGCACTGGGGATCAAACTTGACTGA
Upstream 100 bases:
>100_bases CTTATCTACAAATCGTTCCTTTGAGTGGTACAGTATTCCTTTGAGAGGAACAATATTGATTTCCGTATTTGCATTTCATT CAATTCCATGGAGACTTTTC
Downstream 100 bases:
>100_bases GACCAGCTTCCGGCAACTGGTGCGTGCACGCAACCGGCTGGTGGGCACCTTTGTCAAGACGGCCAGCCATCAGACGGTTG AGGTCCTCGGGACCACCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MINQLVKKYLLGACVLTLAGATSLASAQPFPSKPVKLIVPYPAGAPVDNFARGLGEALTGLWGQPVIVDNRPGANEIIAA SFVAKAPADGYTLLLGSDAAFTHNAFLYSKMPYDADKDLTPITRAVHFNMVLITKGDLKTPTLKDFVALMKKEGPKHSYA SAGSGGTTHQALESLKQEAAFDMIHVPYKGIAPAIQDMLGGNIDAMVAGASAAIPHLQSGKVKILAIAGSKRAKALPDVP TFAESGYPNVMANLYLALAGPAGTPPAIANKITADVQKVLKSKEFLDRFVDPYGYEPIGDTPQQFEAFLKKDKDVSGKRI KALGIKLD
Sequences:
>Translated_328_residues MINQLVKKYLLGACVLTLAGATSLASAQPFPSKPVKLIVPYPAGAPVDNFARGLGEALTGLWGQPVIVDNRPGANEIIAA SFVAKAPADGYTLLLGSDAAFTHNAFLYSKMPYDADKDLTPITRAVHFNMVLITKGDLKTPTLKDFVALMKKEGPKHSYA SAGSGGTTHQALESLKQEAAFDMIHVPYKGIAPAIQDMLGGNIDAMVAGASAAIPHLQSGKVKILAIAGSKRAKALPDVP TFAESGYPNVMANLYLALAGPAGTPPAIANKITADVQKVLKSKEFLDRFVDPYGYEPIGDTPQQFEAFLKKDKDVSGKRI KALGIKLD >Mature_328_residues MINQLVKKYLLGACVLTLAGATSLASAQPFPSKPVKLIVPYPAGAPVDNFARGLGEALTGLWGQPVIVDNRPGANEIIAA SFVAKAPADGYTLLLGSDAAFTHNAFLYSKMPYDADKDLTPITRAVHFNMVLITKGDLKTPTLKDFVALMKKEGPKHSYA SAGSGGTTHQALESLKQEAAFDMIHVPYKGIAPAIQDMLGGNIDAMVAGASAAIPHLQSGKVKILAIAGSKRAKALPDVP TFAESGYPNVMANLYLALAGPAGTPPAIANKITADVQKVLKSKEFLDRFVDPYGYEPIGDTPQQFEAFLKKDKDVSGKRI KALGIKLD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34673; Mature: 34673
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINQLVKKYLLGACVLTLAGATSLASAQPFPSKPVKLIVPYPAGAPVDNFARGLGEALTG CHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH LWGQPVIVDNRPGANEIIAASFVAKAPADGYTLLLGSDAAFTHNAFLYSKMPYDADKDLT CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEECCEEEEECCCCCCCCCCC PITRAVHFNMVLITKGDLKTPTLKDFVALMKKEGPKHSYASAGSGGTTHQALESLKQEAA HHHHHEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH FDMIHVPYKGIAPAIQDMLGGNIDAMVAGASAAIPHLQSGKVKILAIAGSKRAKALPDVP HCEEECCCHHHHHHHHHHHCCCHHEEEECCHHCCCCCCCCCEEEEEEECCCCCCCCCCCC TFAESGYPNVMANLYLALAGPAGTPPAIANKITADVQKVLKSKEFLDRFVDPYGYEPIGD CHHCCCCCHHHHHEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TPQQFEAFLKKDKDVSGKRIKALGIKLD CHHHHHHHHHCCCCCCCCEEEEEECCCC >Mature Secondary Structure MINQLVKKYLLGACVLTLAGATSLASAQPFPSKPVKLIVPYPAGAPVDNFARGLGEALTG CHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH LWGQPVIVDNRPGANEIIAASFVAKAPADGYTLLLGSDAAFTHNAFLYSKMPYDADKDLT CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEECCEEEEECCCCCCCCCCC PITRAVHFNMVLITKGDLKTPTLKDFVALMKKEGPKHSYASAGSGGTTHQALESLKQEAA HHHHHEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH FDMIHVPYKGIAPAIQDMLGGNIDAMVAGASAAIPHLQSGKVKILAIAGSKRAKALPDVP HCEEECCCHHHHHHHHHHHCCCHHEEEECCHHCCCCCCCCCEEEEEEECCCCCCCCCCCC TFAESGYPNVMANLYLALAGPAGTPPAIANKITADVQKVLKSKEFLDRFVDPYGYEPIGD CHHCCCCCHHHHHEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TPQQFEAFLKKDKDVSGKRIKALGIKLD CHHHHHHHHHCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]