| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789628
Identifier: 91789628
GI number: 91789628
Start: 3970514
End: 3972127
Strand: Direct
Name: 91789628
Synonym: Bpro_3783
Alternate gene names: NA
Gene position: 3970514-3972127 (Clockwise)
Preceding gene: 91789627
Following gene: 91789629
Centisome position: 76.35
GC content: 62.33
Gene sequence:
>1614_bases ATGCCCAAACGACAAAGCAAACCCCCTCAGCCCGCGCAGCCGGTTCAAGCCACGGCGGCCACGAAGCCCGAGACGCAGGA GATCGCGTCGATCGACCGCGACTACAACCGGCTCTTCTTCGGCAACACGCTCACCCACGACGACGACACCCTGCTGACCC GTGGCGGCAGCAAGAGTTACCGCATCTATGACGATCTGGAACGCGACGCGCATTGCGGCGCGGTGCTGGACAAACGCAAG ATGGCCGTCACCTCGCGCCCGTGGGTCATCAAGCCCGCCAGCGAAGCCCCGCTCGACGTGGCCGCTGCCGACCTGGTGCG CCTTGCCTTTGGCAAGCTGCGGTTTAACGGCGTCTGCAAGCGAATGCTGGACGCAACGCTGAAGGGCTTTTCAGTCGGTG AGGTGATGTGGGCTGTAGTCGATGGCATGGTGCTGCCTGTCAAGGTCATTAACCGCGACCAGCGCCGCTTCACATTCAAC CTTCAAGGGCAGCTGCGCCTCAAGACCAAAGAAAACATGATGGACGGCATTGCGGTGCCAGAGCGCAAGTTCATCGTGCA CACCTACGGCGGCAAGGATGGCACGCCCTACGGCTTGGGCCTCGGCTCTAAATTGTTCTGGCCGGTCTTCTTCAAAAAGC AGGGTATTGGTTTCTGGCTCACGTTTGCCGACAAGTTTGGTAGCCCCACTGCCTTGGGGAAATACCCCAATGGCACTTTG CAGCCCGAGCAAAACAAACTGCTCAGCGCCTTGCGCGCGATGAGCCAGGACGCAGGCGTCATCATCCCGGCCGGCATGGA GGTCGAGCTGATTGAGGCGTCCCGCAGCGGCAGCGTTGACACCTATGAAAAGCTCATCCGCTACATGGACGAGCAGATCA GCAAGGCCGTGCTGGGTGAAACCATGAGCACCACGGCCGCCAGCACCGGCCTTGGCAGCAACCAGGCGGGCGTGCACAAC GACGTGCGCATTGAGCTGGCCCAGGATGACAACGACGACCTGTGCGAAACACTGGGCAGCACCCTGATTGCCTGGCTCGT TTTTTACAACATGCCCGGCGCGGGCCTGCCCACCCTGGAGCGCGAGTTCGAAGAGCCCGAAGACCTGGCCCAGCGCGCAA CGCGCGACAAGACGGTCGGCGAGCTGGGCTACGAGCCTACCGAGGAATACATCCTTGAGACCTATGGCGAGGGCTGGGTC AAGAAGGCCGCTCCGGCCGCTCCGCCTGCCGGCATGTTCACGCGGCTGGGTGTTGATGGCCAGCAACCCGCGTTTTCTGA GAGCATCGACAAGCTGCGCCGGGCCAGGCGCGCCAACCAGGACGTGCTGGAGCTGGCCGCAGATCAGCTCGCGGGCAATT GGCGCAAGACCATGCAGCGCCGTGTCGAAGACCTGCAGGCGATGCTTGAGGAAACCGGCGACCTGGTGATGTTCCGCGAG CGCATGGCCACGCTGCTTGAAACCGAACCACCCAAGGAACTGGTGGAGAGCATTGCCAACGCCAACTTCGCGGCGCAGCT GCTGGGCCGTGGCCCTGCCGATGCCGAGTTTTCGGAGGCAGATTCCGGCTGGTTTAAAGGCCTCTGGAACCGCCTTTTTA ACGGCGCAAAGTGA
Upstream 100 bases:
>100_bases GCCGACTACGCCATGCGCCGCGAGGTGGTGCCGATTGAATTCCAGGCCCTCGGCGTAGCGCGCGCCAGCAGCAGCATGGC CGATTACATGGGAGGCTGAT
Downstream 100 bases:
>100_bases TGCAGCTTGAAGGCGCGTTCAACCTTGCGCCCAAGAAGGCGCTGGAGTTCTTTCGCAAGAAGGGCTACGCGGTCAGCTTC GCCTGGCAGGACACCTTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 537; Mature: 536
Protein sequence:
>537_residues MPKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSYRIYDDLERDAHCGAVLDKRK MAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCKRMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFN LQGQLRLKTKENMMDGIAVPERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGETMSTTAASTGLGSNQAGVHN DVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLEREFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWV KKAAPAAPPAGMFTRLGVDGQQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK
Sequences:
>Translated_537_residues MPKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSYRIYDDLERDAHCGAVLDKRK MAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCKRMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFN LQGQLRLKTKENMMDGIAVPERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGETMSTTAASTGLGSNQAGVHN DVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLEREFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWV KKAAPAAPPAGMFTRLGVDGQQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK >Mature_536_residues PKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSYRIYDDLERDAHCGAVLDKRKM AVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCKRMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFNL QGQLRLKTKENMMDGIAVPERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTLQ PEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGETMSTTAASTGLGSNQAGVHND VRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLEREFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWVK KAAPAAPPAGMFTRLGVDGQQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRER MATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK
Specific function: Unknown
COG id: COG4383
COG function: function code S; Mu-like prophage protein gp29
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein gp29 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009279 [H]
Pfam domain/function: PF06074 DUF935 [H]
EC number: NA
Molecular weight: Translated: 59459; Mature: 59328
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSY CCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCE RIYDDLERDAHCGAVLDKRKMAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCK EEHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH RMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFNLQGQLRLKTKENMMDGIAVP HHHHHHHCCCCHHHHHHHHHCCCEEEHHHHCCCCCEEEEEECCEEEECCHHHHHCCCCCC ERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL CCEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCCEEEEEEHHHCCCCCCCCCCCCCCC QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGE CCHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH TMSTTAASTGLGSNQAGVHNDVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLE HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH REFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWVKKAAPAAPPAGMFTRLGVDG HHCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCC QQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure PKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSY CCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCE RIYDDLERDAHCGAVLDKRKMAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCK EEHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH RMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFNLQGQLRLKTKENMMDGIAVP HHHHHHHCCCCHHHHHHHHHCCCEEEHHHHCCCCCEEEEEECCEEEECCHHHHHCCCCCC ERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL CCEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCCEEEEEEHHHCCCCCCCCCCCCCCC QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGE CCHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH TMSTTAASTGLGSNQAGVHNDVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLE HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH REFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWVKKAAPAAPPAGMFTRLGVDG HHCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCC QQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]