Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91789627

Identifier: 91789627

GI number: 91789627

Start: 3968935

End: 3970512

Strand: Direct

Name: 91789627

Synonym: Bpro_3782

Alternate gene names: NA

Gene position: 3968935-3970512 (Clockwise)

Preceding gene: 91789626

Following gene: 91789628

Centisome position: 76.32

GC content: 61.41

Gene sequence:

>1578_bases
TTGCATCCCTTGGGTCATAGGGCTCATTTTGGTGAGCCTCGTTCGGGCTTTATCTTGAGCACCACGCCCCCGCTCCTTCA
AAGCGACGCGAACAGTACGGACGCGCCGCCACCTGTCCTGTTGCCGTATCAACAGCGCTGGGTCGCCGACGATTCGCAAT
TCAAGATCGGCGAGAAGTCGCGCCGGATTGGTTTTACCTGGGGCGAGGCGTCTGACGATGTATTGATTGCTGCCAAAGAA
GGCGGCACGAACGTTTTCTACATCGGCCCGACTCAGGACATGGCGCTCGAATACATCGAAGCCTGCGCCATGTGGGCGCG
GGTTTTCAACTTCGCGGCCAGCCAGGTTCAGGAAGGCATCTTCGACGACGAAGATAAGGATATAAAAACCTACAAAATCG
ACTTCCCGGCCAGCGGCCGCCGCATCCTCGCGCTCAGCTCGCGTCCCACCAACCTGCGCGGCAAGCAGGGCGTGATCGTC
ATTGACGAAGCGGCCTTTCATCCCGATTTGCAAGGGCTTTTAAAGGCCGCTATGGCCATGTTGATCTGGGGCGACAAAGT
CCGGGTCTTTTCCAGCCACAACGGGCTGGACAGCCCGTTCAATGAACTGATCATCGACGTCCGGTCGGGCCGACGCAAGG
GCGTGGTCCACCGCGTGACGTTCATGGAGGCCGTCGCCGAGGGCCTCTATAAGCGCGTTTGCATGCGCCGCCGAATTCCC
TGGACTGCCGAGGGCGAGAAGGAGTGGGTCTCCGACGTGTATGGCTTTTACGGCGACGGTGCGACCGAAGAGCTGGACGT
GGTGCCATCGCAAAGCGGTGGTGCCTACCTGACGATGGCCTTGATCGAACGGCAAATGAGCGCCGAGACCCCGCTGATTC
GCGGCAAGTGGAAGTCCGAGTTCAACATCCAGCCCGACTGGGAGCGCGAGGCCGAGATACAGCGCTGGTGTGAAGAACAC
CTGGAGCCAGTGCTCATGGCGCTGCCCAAGCACCTGTGGCACAGCTTCGGCGAAGACTTCGGCCGCGTGGGCGACCTGAC
CGTGATGATCGTGCTGCAGGAGCAGCCCAACCTGGACAAACGCGTGGTGCTGCACGTCGAGCTGAGCAACTGCCCCTTCA
AGCAGCAGGAGCAAATCCTCAAGTTCATCATCGACCGGCTGTACCGCTTTCGCGCGGGCGCGCTGGACCGCACCGGCAAT
GGTGCATACCTGTCTGAGGTGGCCGTGCAGAAGTACGGCGCCACCCGTATCGAGGGCATCCACCTCAGCGAGACCTGGTA
TCTCGAAAACCTGCCGCGCACCAAGGCGGCACTTGAAGACAACACGCTCAGCGGCATCCCCAAAGACAGCCAGGTGCGCG
ACGATCTGCGGGCGCTGCGCGTCATCAACGGCATCCCCAAGCTGCCAGCCGTCAAAACGCAAAAAGGCGACGGCGAAAAG
CTGCAGCGCCACGGCGACTCAGCCGTTGCCCTGGTAATGGCCGACTACGCCATGCGCCGCGAGGTGGTGCCGATTGAATT
CCAGGCCCTCGGCGTAGCGCGCGCCAGCAGCAGCATGGCCGATTACATGGGAGGCTGA

Upstream 100 bases:

>100_bases
TGGTTCTCGCCTGGTGGATGTTGGTGCCTGCGGTGTGGACGGCGATATTCATCGCGTGGATGTGGATTGTCTGTGAAACC
GTCGAGGATATTGGCATCCT

Downstream 100 bases:

>100_bases
TATGCCCAAACGACAAAGCAAACCCCCTCAGCCCGCGCAGCCGGTTCAAGCCACGGCGGCCACGAAGCCCGAGACGCAGG
AGATCGCGTCGATCGACCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MHPLGHRAHFGEPRSGFILSTTPPLLQSDANSTDAPPPVLLPYQQRWVADDSQFKIGEKSRRIGFTWGEASDDVLIAAKE
GGTNVFYIGPTQDMALEYIEACAMWARVFNFAASQVQEGIFDDEDKDIKTYKIDFPASGRRILALSSRPTNLRGKQGVIV
IDEAAFHPDLQGLLKAAMAMLIWGDKVRVFSSHNGLDSPFNELIIDVRSGRRKGVVHRVTFMEAVAEGLYKRVCMRRRIP
WTAEGEKEWVSDVYGFYGDGATEELDVVPSQSGGAYLTMALIERQMSAETPLIRGKWKSEFNIQPDWEREAEIQRWCEEH
LEPVLMALPKHLWHSFGEDFGRVGDLTVMIVLQEQPNLDKRVVLHVELSNCPFKQQEQILKFIIDRLYRFRAGALDRTGN
GAYLSEVAVQKYGATRIEGIHLSETWYLENLPRTKAALEDNTLSGIPKDSQVRDDLRALRVINGIPKLPAVKTQKGDGEK
LQRHGDSAVALVMADYAMRREVVPIEFQALGVARASSSMADYMGG

Sequences:

>Translated_525_residues
MHPLGHRAHFGEPRSGFILSTTPPLLQSDANSTDAPPPVLLPYQQRWVADDSQFKIGEKSRRIGFTWGEASDDVLIAAKE
GGTNVFYIGPTQDMALEYIEACAMWARVFNFAASQVQEGIFDDEDKDIKTYKIDFPASGRRILALSSRPTNLRGKQGVIV
IDEAAFHPDLQGLLKAAMAMLIWGDKVRVFSSHNGLDSPFNELIIDVRSGRRKGVVHRVTFMEAVAEGLYKRVCMRRRIP
WTAEGEKEWVSDVYGFYGDGATEELDVVPSQSGGAYLTMALIERQMSAETPLIRGKWKSEFNIQPDWEREAEIQRWCEEH
LEPVLMALPKHLWHSFGEDFGRVGDLTVMIVLQEQPNLDKRVVLHVELSNCPFKQQEQILKFIIDRLYRFRAGALDRTGN
GAYLSEVAVQKYGATRIEGIHLSETWYLENLPRTKAALEDNTLSGIPKDSQVRDDLRALRVINGIPKLPAVKTQKGDGEK
LQRHGDSAVALVMADYAMRREVVPIEFQALGVARASSSMADYMGG
>Mature_525_residues
MHPLGHRAHFGEPRSGFILSTTPPLLQSDANSTDAPPPVLLPYQQRWVADDSQFKIGEKSRRIGFTWGEASDDVLIAAKE
GGTNVFYIGPTQDMALEYIEACAMWARVFNFAASQVQEGIFDDEDKDIKTYKIDFPASGRRILALSSRPTNLRGKQGVIV
IDEAAFHPDLQGLLKAAMAMLIWGDKVRVFSSHNGLDSPFNELIIDVRSGRRKGVVHRVTFMEAVAEGLYKRVCMRRRIP
WTAEGEKEWVSDVYGFYGDGATEELDVVPSQSGGAYLTMALIERQMSAETPLIRGKWKSEFNIQPDWEREAEIQRWCEEH
LEPVLMALPKHLWHSFGEDFGRVGDLTVMIVLQEQPNLDKRVVLHVELSNCPFKQQEQILKFIIDRLYRFRAGALDRTGN
GAYLSEVAVQKYGATRIEGIHLSETWYLENLPRTKAALEDNTLSGIPKDSQVRDDLRALRVINGIPKLPAVKTQKGDGEK
LQRHGDSAVALVMADYAMRREVVPIEFQALGVARASSSMADYMGG

Specific function: Unknown

COG id: COG4373

COG function: function code R; Mu-like prophage FluMu protein gp28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To phage Mu protein gp28 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004921
- InterPro:   IPR012036 [H]

Pfam domain/function: PF03237 Terminase_6 [H]

EC number: NA

Molecular weight: Translated: 58951; Mature: 58951

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPLGHRAHFGEPRSGFILSTTPPLLQSDANSTDAPPPVLLPYQQRWVADDSQFKIGEKS
CCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCEECCCHHHHCCCCCCEECCCCC
RRIGFTWGEASDDVLIAAKEGGTNVFYIGPTQDMALEYIEACAMWARVFNFAASQVQEGI
CEEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDDEDKDIKTYKIDFPASGRRILALSSRPTNLRGKQGVIVIDEAAFHPDLQGLLKAAMAM
CCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
LIWGDKVRVFSSHNGLDSPFNELIIDVRSGRRKGVVHRVTFMEAVAEGLYKRVCMRRRIP
HHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
WTAEGEKEWVSDVYGFYGDGATEELDVVPSQSGGAYLTMALIERQMSAETPLIRGKWKSE
CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHCCCCEEECCCCCC
FNIQPDWEREAEIQRWCEEHLEPVLMALPKHLWHSFGEDFGRVGDLTVMIVLQEQPNLDK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
RVVLHVELSNCPFKQQEQILKFIIDRLYRFRAGALDRTGNGAYLSEVAVQKYGATRIEGI
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECEE
HLSETWYLENLPRTKAALEDNTLSGIPKDSQVRDDLRALRVINGIPKLPAVKTQKGDGEK
EECCEEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
LQRHGDSAVALVMADYAMRREVVPIEFQALGVARASSSMADYMGG
HHHCCCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHPLGHRAHFGEPRSGFILSTTPPLLQSDANSTDAPPPVLLPYQQRWVADDSQFKIGEKS
CCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCEECCCHHHHCCCCCCEECCCCC
RRIGFTWGEASDDVLIAAKEGGTNVFYIGPTQDMALEYIEACAMWARVFNFAASQVQEGI
CEEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDDEDKDIKTYKIDFPASGRRILALSSRPTNLRGKQGVIVIDEAAFHPDLQGLLKAAMAM
CCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
LIWGDKVRVFSSHNGLDSPFNELIIDVRSGRRKGVVHRVTFMEAVAEGLYKRVCMRRRIP
HHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
WTAEGEKEWVSDVYGFYGDGATEELDVVPSQSGGAYLTMALIERQMSAETPLIRGKWKSE
CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHCCCCEEECCCCCC
FNIQPDWEREAEIQRWCEEHLEPVLMALPKHLWHSFGEDFGRVGDLTVMIVLQEQPNLDK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
RVVLHVELSNCPFKQQEQILKFIIDRLYRFRAGALDRTGNGAYLSEVAVQKYGATRIEGI
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECEE
HLSETWYLENLPRTKAALEDNTLSGIPKDSQVRDDLRALRVINGIPKLPAVKTQKGDGEK
EECCEEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
LQRHGDSAVALVMADYAMRREVVPIEFQALGVARASSSMADYMGG
HHHCCCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]