Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91789597

Identifier: 91789597

GI number: 91789597

Start: 3954222

End: 3956540

Strand: Direct

Name: 91789597

Synonym: Bpro_3752

Alternate gene names: NA

Gene position: 3954222-3956540 (Clockwise)

Preceding gene: 91789596

Following gene: 91789598

Centisome position: 76.04

GC content: 67.79

Gene sequence:

>2319_bases
ATGAGCGCCGTCGCCAAAGACTGGCTCACCGCCAACGAGCTGCTCGGCCTGCCCAACATGCCGGCCGACAAGCGGGGAGT
GCACCGCAAGGCGCTGGCCTCCGGCTGGCAATACCGCGAAGTCGCCGGCAACGGCGGCACCCGGCGCGAGTACCACGTGG
CCAGCCTACCCGCCACCACGCGGGCCGCGCTGTCCTGGCACACCACGGCCGTGCTGGCCGGCAATGCGGGCCAGGCCCTG
CAGGCCGCCGCCCAGGTCGGAACGGTGGAGGGCGCAAAAGCGGCGCTTAAAAGTAATCTTTCTACCCATGTGGCCGACAC
CGCCAAGGCCGAGGGCCTGCGCAACCTGGCCGCCATGCCCGCCAACGAGCAGCGCCGCATGGACGCCCGGCTGCAGGTGC
TGCAGGCCTTTGAAGCCTTCCAGCAGGCCAGCGGCGTCGCCATGACGGTGGCCGAGCACCAGTTCAGCAGCGCCTACCGG
CTCGGCCATGTGGCCGTCGAGCCCTGGGTGCGCGCCCTGGTGGGCACCGTGGCCCCGGCCAGCATCCAGCGCTGGCGCCT
GGCCGTGCGCAAGGGCGGCATCACCGCGCTGGCCGGCGCTTACGGCAACCGCAAAGGCGCTTCAAAGATAGACGCCCAGC
CGCAGATGCGCGAGTTTGTGCAGGCCATGCTGGTGCGCTTTCCCGAGTCCCGCGCCACGCAAATCATGCACGGCCTGCGC
ACCCGCCTGGCCGGCGACATTGCGGGCGGCAGCATCGAGCTGCCCAGCATGCGCAGCCTGGAGCGCTGGATGGAGACCTG
GCGCGAGAAGAATGCCCAGACGCTCATGGCCCTGAGCAACCCCGACGCCTGGAAGAACAAGTTCATGGTCGCCTTCGGTT
CGCAGAGCGAAGGCGTCACCGGCATCAACCAGCGCTGGGAGCTTGACAGCACCCCCGCCGACGTCATGCTCACTGACGGC
CGCCACGCGGTGCTGGGCGTGGTTGACGTGTTCACCCGCCGCGCCAAGCTGCTGGTCAGCAAGACCAGCAAGTCCACGGC
CGTGACCCAGGTGCTGCGCGATGCGCTGCTCGACTGGGGCGTGCCCGCCCTCATCAAGACCGACAACGGCAGCGACTACA
AGAGCAAGCACGTCGGCTACGTCGCCGCCAACCTGGACATCAAGCAGGAGTTCTGCCCACCGTTCCAGCCCTGGCACAAG
CCGCACATCGAGCGCTTCTTTGGCACGTTTGCGCGCGGCATGCTGGAGCTGCTGCCCAACTTCATCGGGCACAACGTGGC
CGAGCGCAGCGCCATCGAGTCGCGCACCAGCTTTGCCGACCGGCTCATGAAGCGCGGCGAGGTGGTGCCCATCAACATGA
GCGCCGCCGAGTTCCAGCTCTTTTGCAACCAGTGGGTTGACGGCATGTATATGCACGAGCCCCACGAGGGCCTGCAAAGC
CGCACGCCCTTTGCGGTGGCCAGCGCCAACCGCGAGCAGGTGCGCATCATCAAAGACGAGCGCGTGCTCGATGTCCTGCT
GGCTGAAGCCGCAGGCAGCCAGGGCGGCTACCTCACCGTCCAGAAAAAAGGCCTCAAGAGCGACGGTGCCTGGTTCATCG
CTCCCGAGCTGGAGGCCTGGGTCGGCCAGCGCGTCATGGCCCGGCAGCTGCCTGACCTCGGCCAGATCGTGGTCTACGGC
GGCGACAACCGGCTCATCTGCATTGCCGAATGCCCCGAGCGCACCGGCATGGACCGCAAGGAGGTTGCCGCCAAGGGCCG
CGAGCTGCAGAAAAAACGCGTGCAGGAAGAGCGCGCCGCCCTCAAGGCCGCCGCCAAGCGCCAGAACGTCGACGGCATCG
TGCACGAGATCCTGCTCGACCGCGCCCAGCAGGCCGGCAAGCTGGCCATGCTGCCCAAGCAGACGGTCGAGCACACCAGC
ACCGGCCTGCAGGGTGCCGCCAACGCCCTGGCCGAGATCACCCGCGAGCCAGGCACCAGCGCCGAGCTGCTGCGCCTGGA
GGGCGTCTCCAGCGCCTGGCAGCGCCTGCAGGCCGAGCAGGCCATCAACGACATCCCCGAGGGCAATGACAACGAGCTGG
CCCGCCGCCGCGCCGAGGTGCAGCCGGTGTTCAACACCCCGCACGAGCGCGCCCAGTGGATTGAAAAGCGCAGCCGCGTG
CGCGCCCTCACAGACGAAGAACGCGACTACATGGCGCGCTTCAAGAAAGACAACCTGGCGAGCTATCGCCGGATTGTGGA
GCTGGTGGACGACATGACCAACGACATGTCATCCGCCCAAAAAGAAACCCCGGACGCATCCGCATCCGGGGCCAGTTAA

Upstream 100 bases:

>100_bases
CACGCACCATGCTGCAGGCTTTCAAGCGCTACCAGGAGCGCACCCAGGGCCGCTGCCGCGCCTGCGGCCAGCCCACCCCC
CAGACACAGGCGGCTACTGT

Downstream 100 bases:

>100_bases
CCGCTGTGAGCCCAAGGCCTGAGAAACCAGACCACAGCAGAACCGAAAAAGAAAGAAAGATTGTATGCGTCAAAAACTAG
CCGGTGTCAAGAACGTAGCC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Transposase; Transposase Protein A; Bacteriophage DNA Transposition Protein A; Integrase Catalytic Subunit; Prophage Mu DNA Transposition Protein A; Prophage; Prophage Mu Protein; Transposase-Like Mu; Bacteriophage DNA Transposase; Phage Transposase Protein A

Number of amino acids: Translated: 772; Mature: 771

Protein sequence:

>772_residues
MSAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATTRAALSWHTTAVLAGNAGQAL
QAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMPANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYR
LGHVAVEPWVRALVGTVAPASIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR
TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVTGINQRWELDSTPADVMLTDG
RHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWGVPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHK
PHIERFFGTFARGMLELLPNFIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS
RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAWVGQRVMARQLPDLGQIVVYG
GDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAALKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTS
TGLQGAANALAEITREPGTSAELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV
RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS

Sequences:

>Translated_772_residues
MSAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATTRAALSWHTTAVLAGNAGQAL
QAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMPANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYR
LGHVAVEPWVRALVGTVAPASIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR
TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVTGINQRWELDSTPADVMLTDG
RHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWGVPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHK
PHIERFFGTFARGMLELLPNFIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS
RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAWVGQRVMARQLPDLGQIVVYG
GDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAALKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTS
TGLQGAANALAEITREPGTSAELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV
RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS
>Mature_771_residues
SAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATTRAALSWHTTAVLAGNAGQALQ
AAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMPANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYRL
GHVAVEPWVRALVGTVAPASIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLRT
RLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVTGINQRWELDSTPADVMLTDGR
HAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWGVPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHKP
HIERFFGTFARGMLELLPNFIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQSR
TPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAWVGQRVMARQLPDLGQIVVYGG
DNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAALKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTST
GLQGAANALAEITREPGTSAELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRVR
ALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85071; Mature: 84940

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATT
CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCHH
RAALSWHTTAVLAGNAGQALQAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMP
HHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
ANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYRLGHVAVEPWVRALVGTVAPA
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHCCHH
SIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR
HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVT
HHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCEEEEECCCCCCCC
GINQRWELDSTPADVMLTDGRHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWG
CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
VPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHKPHIERFFGTFARGMLELLPN
CCEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS
HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCEEECCHHHHHC
RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAW
CCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCHHHH
VGQRVMARQLPDLGQIVVYGGDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAA
HHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTSTGLQGAANALAEITREPGTS
HHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC
AELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV
HHHHEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATT
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCHH
RAALSWHTTAVLAGNAGQALQAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMP
HHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
ANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYRLGHVAVEPWVRALVGTVAPA
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHCCHH
SIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR
HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVT
HHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCEEEEECCCCCCCC
GINQRWELDSTPADVMLTDGRHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWG
CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
VPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHKPHIERFFGTFARGMLELLPN
CCEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS
HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCEEECCHHHHHC
RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAW
CCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCHHHH
VGQRVMARQLPDLGQIVVYGGDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAA
HHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTSTGLQGAANALAEITREPGTS
HHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC
AELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV
HHHHEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA