| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is dam [H]
Identifier: 91789573
GI number: 91789573
Start: 3935073
End: 3935897
Strand: Reverse
Name: dam [H]
Synonym: Bpro_3728
Alternate gene names: 91789573
Gene position: 3935897-3935073 (Counterclockwise)
Preceding gene: 91789574
Following gene: 91789572
Centisome position: 75.69
GC content: 59.39
Gene sequence:
>825_bases ATGACAAAACGGGAGCCCCGAGCGCTCATTAACAATGCAATGCATATTCAGGCCTCGCCCTTGGTGCCGTGGGTAGGTGG CAAGCGTCGCCTGGCGCAATTCATCCTGCCCATGTTTCCTGACCACAGCTGCTACGTCGAGCCTTTCTGCGGAGCCGCAG CGCTGTTCTTCATGAAGCCCCCGGTCAGGGTCGAGGTGCTGAATGATGTCAACAGCGACCTGGTGCGGCTTTACCGGGTA GTGACCCACCATCTTGACGAGTTCATCCGGCAATTCAGGTGGGCGCTCAACAGCCGCGAGTTGTTCAATTGGCTGCAGGA GACGCCACCGGCCACGCTGACCGATATACAGAGAGCTGCGCGGTTCTACTACCTGCAAAAGTGCGCTTTCGGTGGCAAGG TGAAGGGCCAGAGCTTCGGCACCGCCACCACGGCCAAGGCCAGCATCAACCTGCTCAGAATGGAAGAGGATTTAAGCGCC GTCCACCTGCGCCTACACCAGGTGTTTATTGAGCACCTGGACTGGGCCAAATGCGTTGAAAAATACGACCGGCCCCACAG CTTGTTTTACCTCGATCCGCCCTACTGGGGAACCGAGGGTTACGGTGTCGATTTCGGCCTTGAGCAGTACGACCGGATGG CCGAGCTGCTGCGCACCATGAAGGGCAAGGCGGCCGTCAGCGTGAACGACATCCCGGAGATGCGCCAGGCCTTCAAGGGC CTGTCCATCAAACGGTTGGTCACCAGCTACACCCTGGGCCGATCTGGGGAGGGCAGGCAGGCCAAGGGCGAGCTGCTGAT TACCAATTTCAAGCCTGGGGGATGA
Upstream 100 bases:
>100_bases TGCGGGGCCTTGAACATTTTGAGGGCCAGAGCCGCTGATCACAGCAGCCAGAGCACCACCCAAGCACGCCCCCGAGCGTC ATCTGCAAATGGAGCTGAAG
Downstream 100 bases:
>100_bases CCAGCAGGCCCACCGGCATGCGGGCCAAGCGCCAAGGCCCTAGGAGCCGCGAGCCGGTCCCCCCTGCCCAGTGCCTTGGC CAGCGTAAGATCGCAGCTCC
Product: DNA adenine methylase
Products: NA
Alternate protein names: DNA adenine methyltransferase; Deoxyadenosyl-methyltransferase; M.HindIV [H]
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MTKREPRALINNAMHIQASPLVPWVGGKRRLAQFILPMFPDHSCYVEPFCGAAALFFMKPPVRVEVLNDVNSDLVRLYRV VTHHLDEFIRQFRWALNSRELFNWLQETPPATLTDIQRAARFYYLQKCAFGGKVKGQSFGTATTAKASINLLRMEEDLSA VHLRLHQVFIEHLDWAKCVEKYDRPHSLFYLDPPYWGTEGYGVDFGLEQYDRMAELLRTMKGKAAVSVNDIPEMRQAFKG LSIKRLVTSYTLGRSGEGRQAKGELLITNFKPGG
Sequences:
>Translated_274_residues MTKREPRALINNAMHIQASPLVPWVGGKRRLAQFILPMFPDHSCYVEPFCGAAALFFMKPPVRVEVLNDVNSDLVRLYRV VTHHLDEFIRQFRWALNSRELFNWLQETPPATLTDIQRAARFYYLQKCAFGGKVKGQSFGTATTAKASINLLRMEEDLSA VHLRLHQVFIEHLDWAKCVEKYDRPHSLFYLDPPYWGTEGYGVDFGLEQYDRMAELLRTMKGKAAVSVNDIPEMRQAFKG LSIKRLVTSYTLGRSGEGRQAKGELLITNFKPGG >Mature_273_residues TKREPRALINNAMHIQASPLVPWVGGKRRLAQFILPMFPDHSCYVEPFCGAAALFFMKPPVRVEVLNDVNSDLVRLYRVV THHLDEFIRQFRWALNSRELFNWLQETPPATLTDIQRAARFYYLQKCAFGGKVKGQSFGTATTAKASINLLRMEEDLSAV HLRLHQVFIEHLDWAKCVEKYDRPHSLFYLDPPYWGTEGYGVDFGLEQYDRMAELLRTMKGKAAVSVNDIPEMRQAFKGL SIKRLVTSYTLGRSGEGRQAKGELLITNFKPGG
Specific function: Methylates DNA within the sequence GATC. Directly involved in methyl-directed DNA mismatch repair [H]
COG id: COG0338
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789789, Length=268, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023095 - InterPro: IPR002052 - InterPro: IPR012327 [H]
Pfam domain/function: PF02086 MethyltransfD12 [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 31356; Mature: 31224
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKREPRALINNAMHIQASPLVPWVGGKRRLAQFILPMFPDHSCYVEPFCGAAALFFMKP CCCCCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCC PVRVEVLNDVNSDLVRLYRVVTHHLDEFIRQFRWALNSRELFNWLQETPPATLTDIQRAA CCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH RFYYLQKCAFGGKVKGQSFGTATTAKASINLLRMEEDLSAVHLRLHQVFIEHLDWAKCVE HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH KYDRPHSLFYLDPPYWGTEGYGVDFGLEQYDRMAELLRTMKGKAAVSVNDIPEMRQAFKG HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCC LSIKRLVTSYTLGRSGEGRQAKGELLITNFKPGG CHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure TKREPRALINNAMHIQASPLVPWVGGKRRLAQFILPMFPDHSCYVEPFCGAAALFFMKP CCCCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCC PVRVEVLNDVNSDLVRLYRVVTHHLDEFIRQFRWALNSRELFNWLQETPPATLTDIQRAA CCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH RFYYLQKCAFGGKVKGQSFGTATTAKASINLLRMEEDLSAVHLRLHQVFIEHLDWAKCVE HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH KYDRPHSLFYLDPPYWGTEGYGVDFGLEQYDRMAELLRTMKGKAAVSVNDIPEMRQAFKG HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCC LSIKRLVTSYTLGRSGEGRQAKGELLITNFKPGG CHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]