| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is ycdJ [C]
Identifier: 91789537
GI number: 91789537
Start: 3902527
End: 3903423
Strand: Reverse
Name: ycdJ [C]
Synonym: Bpro_3690
Alternate gene names: 91789537
Gene position: 3903423-3902527 (Counterclockwise)
Preceding gene: 91789538
Following gene: 91789536
Centisome position: 75.06
GC content: 70.46
Gene sequence:
>897_bases ATGAACGCCGTGCCCCGCACCGCTGACGATCTGCTGCAGGCGCCGCTCGCGCTGCTGGATAGTCGCTTTCCCCAGCGCAT CGTGCCGCTGCCCTCGGGCGCGCAGGTGGCGCTGCGCGAATGCGGTGCGCCCGGCGAGGCGCCCACGGTTGTGCTGCTGC ACGGCATCAGCTCCGGCGCTGCCTCATGGTCGCATGCGGCGCTGCTGGCCGGTGAGCAGGTGCATGTCATGGCGTGGGAT GCCCCCGGCTATGGTGACTCCACCCCGCTTCGGGGCGATGCCCCCACGGACGCAGACTATGCGGCACGCCTGCATGAACT GCTGCAGGCGATGGGCGTTCGCCGCTGCGTGCTGGTCGGCCATTCGCTGGGCGCGCTGATGGCTTGCGCCTACGCCCGCG ATCTGGGTGCAGACCGCGTCACACGCGTGGTGCTCATCAGCCCGGCGGGCGGCTATGGCGCTGCCGCGCAGGCCACCACC CGCGAGCGCGTGCGCAACGAGCGCCGCGATGCGCTGCAGATGCTGGGCGTGGCCGGCCTGGCAGAGCGCATCCCGCAGCG CCTGCTCTCGCCGGCGGCAGACTCTGCGGCACGTGCCTGGGTGCAATGGAACACCGCCCGCCTGCAGCCCGAAGGCTACC TGCAGGCCGTCGAGCTGCTGTGCGCCAGCGACCTGGGAACAAGCCAGGGTCTGGCCATGCCGGTGGAGGTTCACTGCGGC GACGCCGACGTGGTCACACCGCCCGCTGCCTGCCGTGTCTGGGCAGACTTGTATGCTGCGCCCTTTGACTTGATCAAGGG AGCCGGCCATGCCAGCCCTGTGGAGCAACCTGAAGCGGTCGCGCGCCTGATCACGCGCGCCGCGATGCAACCAAACGGAG CCACGCACCATGAGTGA
Upstream 100 bases:
>100_bases ACGCGCTGATGTGCGTGATGCTGGGCAACAAGAAGCCCATCACGCCCACCTATCCGCCCGAGCACCCGCTCGCCAAGATC AAGCGCTGAGCGCATCTGCC
Downstream 100 bases:
>100_bases CAACACCGCCGAAGAAAACGGCAACGACAAATACATCGTCCCCGCGCTGGAGCGCGGCCTGCGCCTGCTCGGAGAATTCA GCCGCGACAGCCGCACGCTG
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; 3-Oxoadipate Enol-Lactonase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; 2-Hydroxymuconate-Semialdehyde Hydrolase; Alpha/Beta Superfamily Hydrolase/Acyltransferase
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGAASWSHAALLAGEQVHVMAWD APGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVGHSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATT RERVRNERRDALQMLGVAGLAERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE
Sequences:
>Translated_298_residues MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGAASWSHAALLAGEQVHVMAWD APGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVGHSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATT RERVRNERRDALQMLGVAGLAERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE >Mature_298_residues MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGAASWSHAALLAGEQVHVMAWD APGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVGHSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATT RERVRNERRDALQMLGVAGLAERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31313; Mature: 31313
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGA CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC ASWSHAALLAGEQVHVMAWDAPGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVG CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH HSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATTRERVRNERRDALQMLGVAGL HHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG HHHHHHHHHCCCHHHHHHHHHEECHHEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGA CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC ASWSHAALLAGEQVHVMAWDAPGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVG CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH HSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATTRERVRNERRDALQMLGVAGL HHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG HHHHHHHHHCCCHHHHHHHHHEECHHEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA