| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ilvB [H]
Identifier: 91789534
GI number: 91789534
Start: 3899226
End: 3900896
Strand: Reverse
Name: ilvB [H]
Synonym: Bpro_3687
Alternate gene names: 91789534
Gene position: 3900896-3899226 (Counterclockwise)
Preceding gene: 91789535
Following gene: 91789533
Centisome position: 75.01
GC content: 68.52
Gene sequence:
>1671_bases ATGCCTGACAACAACCAAATCACGGTCGGCGCCGCCATTGCCGCATTCCTCGAGGAGTGCGGTGTCAAGGCTGCCTTCGG CGTCATTTCCATCCACAACATGCCCATCCTGGATGCCTTCAACGAGCGCGGCAAAATCCGTTTCGTGATGGCGCGCGGCG AGGCCGGCGGCACCAACATGGCCGACGCGTATGCCCGCACCACGGGCGGCCTGGGCGTGTGCCTGACCAGCACCGGCACC GCCGCCGGCAACGCCGCCGGCGCCATGGTGGAAGCGCTCACCGCCGGCACGCCGCTGCTGCACCTGACGGGCCAGATCGA AACGCCTTACCTCGACCAGAGCCTGTCCTACATCCACGAAGCGCCCGACCAGCTCACCATGCTGCAGGCCGTGTCCAAGG CGGCCTTTCGCGTGCGCAGTGTCGAGACCGCGCTCAGCACCATCAAGCTGGCTGTGCAGACCGCGCTGACGGCGCCGACC GGCCCGGTCAGCGTGGAGATACCGATCGACATCCAGGCGGCGCTGATGCCCCTGCCGGCCGACCTCAAGCCGCTGCCCGT GGTGGCGCACCAGCCGTCCGCCCATGCGCTGGACGAACTCGCCGACCGCCTGGCCAAGGCCCGCCGCCCGCTGCTGTGGC TGGGCGGTGGAGCCCGCCATGCGGGCGCGGCGGTGGCCCGCCTCATGGCCATGGGCCTGGGCGTGGTCAGCAGCACCCAG GGCCGCGGCATCGTGCCCGAGGACGACGTCCGGTCGCTGGGCGCCTACAACCTGCACAAACCGGTGGAAAACTTCTACCA GACCTGCGATGCCATGGTGGTCGTGGGCTCGCGCCTGCGCGGCAACGAGACGCTGAAGTACGAACTCAAACTGCCGCGCC CGCTCTACCGCGTGGACGCCGACCCCGCCGCCGAAGGCCGCTGCTACGCCACGGACTATTTCGTGCACGGCGACTCCGAA CTCGTGCTGCAGGGGCTGGCCGACCGTCTCGAAGGCCGCCTGTCGATTGACCCGGCCTTCATGGCCGACCTGCGTGCCGC GCGTGCCGCGGCCGAGAAAAGCCTGCTCGACGGCCTCGGCCCCTACACGGAACTGGTGAGCCAGCTGCAGCAGGCCGCCG GCCGAAACTTCAACTGGGTGCGTGACGTCACGGTGTCCAACAGCACCTGGGGCAACCGCCAGCTGCACATCTTCGATCCG CGTGCCGGCGTGCATGCGCTGGGCGGCGGCATCGGGCAGGGCCTGGCCATGGGCGTGGGCGCCGCCGTGGGTTCTGCCGT CACCGGTTCGGGCCGCAAAACCTTTTGCCTGTCGGGCGATGGCGGCTTCATCCTGAATCTGGGCGAACTGGCCACGGCCG TGCAGGAGAAGGCCGGCGTGGTGTACGTGCTGATGAACGACAAGCGCTATGGCGTGATCCAGAACATCCAGGACGCCCAG TACGGTGGCCGCCGATGCTATGTCGACCTGCACACGCCGGACTACGCGCAACTGTGTGCCTCGTTGCAGCTGGGCCACAC GCGCGTGAGCCGGCTCGCCGACCTGCCCGCCGGCCTGGACAAGGCGCTGGCTGCCAGCGGTCCCTTTATCCTGGAGATCG ACATGCTCTCCATCGGCAGCTTCAAAACTGCTTTTGCCGGCCCGCCGACCAAAGTCGTGGTCGCGGCCTGA
Upstream 100 bases:
>100_bases CTGCCGCAAGAGGCCGCCCGCGCCATTTTCTTTTTAGCCACCCCGCTGTCGTCGTACACGACCGGCAGCCACATCGATGT TTCCGGAGGTCTTTCCCATC
Downstream 100 bases:
>100_bases AGCGTGATGCCATGCTGAAAATTGCCATGATTGGTTGCGGCGCGATTGGCGCCAGCGTGCTGGAGTTGCTGCATGGCGAC TCCGACGTGGTGGTGGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: AHAS; Acetohydroxy-acid synthase large subunit; ALS [H]
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MPDNNQITVGAAIAAFLEECGVKAAFGVISIHNMPILDAFNERGKIRFVMARGEAGGTNMADAYARTTGGLGVCLTSTGT AAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLSYIHEAPDQLTMLQAVSKAAFRVRSVETALSTIKLAVQTALTAPT GPVSVEIPIDIQAALMPLPADLKPLPVVAHQPSAHALDELADRLAKARRPLLWLGGGARHAGAAVARLMAMGLGVVSSTQ GRGIVPEDDVRSLGAYNLHKPVENFYQTCDAMVVVGSRLRGNETLKYELKLPRPLYRVDADPAAEGRCYATDYFVHGDSE LVLQGLADRLEGRLSIDPAFMADLRAARAAAEKSLLDGLGPYTELVSQLQQAAGRNFNWVRDVTVSNSTWGNRQLHIFDP RAGVHALGGGIGQGLAMGVGAAVGSAVTGSGRKTFCLSGDGGFILNLGELATAVQEKAGVVYVLMNDKRYGVIQNIQDAQ YGGRRCYVDLHTPDYAQLCASLQLGHTRVSRLADLPAGLDKALAASGPFILEIDMLSIGSFKTAFAGPPTKVVVAA
Sequences:
>Translated_556_residues MPDNNQITVGAAIAAFLEECGVKAAFGVISIHNMPILDAFNERGKIRFVMARGEAGGTNMADAYARTTGGLGVCLTSTGT AAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLSYIHEAPDQLTMLQAVSKAAFRVRSVETALSTIKLAVQTALTAPT GPVSVEIPIDIQAALMPLPADLKPLPVVAHQPSAHALDELADRLAKARRPLLWLGGGARHAGAAVARLMAMGLGVVSSTQ GRGIVPEDDVRSLGAYNLHKPVENFYQTCDAMVVVGSRLRGNETLKYELKLPRPLYRVDADPAAEGRCYATDYFVHGDSE LVLQGLADRLEGRLSIDPAFMADLRAARAAAEKSLLDGLGPYTELVSQLQQAAGRNFNWVRDVTVSNSTWGNRQLHIFDP RAGVHALGGGIGQGLAMGVGAAVGSAVTGSGRKTFCLSGDGGFILNLGELATAVQEKAGVVYVLMNDKRYGVIQNIQDAQ YGGRRCYVDLHTPDYAQLCASLQLGHTRVSRLADLPAGLDKALAASGPFILEIDMLSIGSFKTAFAGPPTKVVVAA >Mature_555_residues PDNNQITVGAAIAAFLEECGVKAAFGVISIHNMPILDAFNERGKIRFVMARGEAGGTNMADAYARTTGGLGVCLTSTGTA AGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLSYIHEAPDQLTMLQAVSKAAFRVRSVETALSTIKLAVQTALTAPTG PVSVEIPIDIQAALMPLPADLKPLPVVAHQPSAHALDELADRLAKARRPLLWLGGGARHAGAAVARLMAMGLGVVSSTQG RGIVPEDDVRSLGAYNLHKPVENFYQTCDAMVVVGSRLRGNETLKYELKLPRPLYRVDADPAAEGRCYATDYFVHGDSEL VLQGLADRLEGRLSIDPAFMADLRAARAAAEKSLLDGLGPYTELVSQLQQAAGRNFNWVRDVTVSNSTWGNRQLHIFDPR AGVHALGGGIGQGLAMGVGAAVGSAVTGSGRKTFCLSGDGGFILNLGELATAVQEKAGVVYVLMNDKRYGVIQNIQDAQY GGRRCYVDLHTPDYAQLCASLQLGHTRVSRLADLPAGLDKALAASGPFILEIDMLSIGSFKTAFAGPPTKVVVAA
Specific function: Valine and isoleucine biosynthesis; first step. [C]
COG id: COG0028
COG function: function code EH; Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TPP enzyme family [H]
Homologues:
Organism=Homo sapiens, GI21361361, Length=538, Percent_Identity=24.3494423791822, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI93004078, Length=504, Percent_Identity=24.0079365079365, Blast_Score=80, Evalue=7e-15, Organism=Escherichia coli, GI1790104, Length=538, Percent_Identity=25.8364312267658, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1786717, Length=561, Percent_Identity=25.8467023172906, Blast_Score=144, Evalue=1e-35, Organism=Escherichia coli, GI87081685, Length=529, Percent_Identity=26.4650283553875, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1787096, Length=547, Percent_Identity=24.4972577696526, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1788716, Length=495, Percent_Identity=23.6363636363636, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6323755, Length=565, Percent_Identity=24.7787610619469, Blast_Score=139, Evalue=8e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012846 - InterPro: IPR012000 - InterPro: IPR012001 - InterPro: IPR000399 - InterPro: IPR011766 [H]
Pfam domain/function: PF02775 TPP_enzyme_C; PF00205 TPP_enzyme_M; PF02776 TPP_enzyme_N [H]
EC number: =2.2.1.6 [H]
Molecular weight: Translated: 58493; Mature: 58362
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDNNQITVGAAIAAFLEECGVKAAFGVISIHNMPILDAFNERGKIRFVMARGEAGGTNM CCCCCEEEHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEEEEEECCCCCCCH ADAYARTTGGLGVCLTSTGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLSYIHE HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH APDQLTMLQAVSKAAFRVRSVETALSTIKLAVQTALTAPTGPVSVEIPIDIQAALMPLPA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCC DLKPLPVVAHQPSAHALDELADRLAKARRPLLWLGGGARHAGAAVARLMAMGLGVVSSTQ CCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCEECCC GRGIVPEDDVRSLGAYNLHKPVENFYQTCDAMVVVGSRLRGNETLKYELKLPRPLYRVDA CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCEEECC DPAAEGRCYATDYFVHGDSELVLQGLADRLEGRLSIDPAFMADLRAARAAAEKSLLDGLG CCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC PYTELVSQLQQAAGRNFNWVRDVTVSNSTWGNRQLHIFDPRAGVHALGGGIGQGLAMGVG HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCHHHHCCCHHHHHHHHHH AAVGSAVTGSGRKTFCLSGDGGFILNLGELATAVQEKAGVVYVLMNDKRYGVIQNIQDAQ HHHCCCEECCCCEEEEEECCCCEEEEHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCHHC YGGRRCYVDLHTPDYAQLCASLQLGHTRVSRLADLPAGLDKALAASGPFILEIDMLSIGS CCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEECCC FKTAFAGPPTKVVVAA CCHHCCCCCCEEEEEC >Mature Secondary Structure PDNNQITVGAAIAAFLEECGVKAAFGVISIHNMPILDAFNERGKIRFVMARGEAGGTNM CCCCEEEHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEEEEEECCCCCCCH ADAYARTTGGLGVCLTSTGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLSYIHE HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH APDQLTMLQAVSKAAFRVRSVETALSTIKLAVQTALTAPTGPVSVEIPIDIQAALMPLPA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCC DLKPLPVVAHQPSAHALDELADRLAKARRPLLWLGGGARHAGAAVARLMAMGLGVVSSTQ CCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCEECCC GRGIVPEDDVRSLGAYNLHKPVENFYQTCDAMVVVGSRLRGNETLKYELKLPRPLYRVDA CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCEEECC DPAAEGRCYATDYFVHGDSELVLQGLADRLEGRLSIDPAFMADLRAARAAAEKSLLDGLG CCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC PYTELVSQLQQAAGRNFNWVRDVTVSNSTWGNRQLHIFDPRAGVHALGGGIGQGLAMGVG HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCHHHHCCCHHHHHHHHHH AAVGSAVTGSGRKTFCLSGDGGFILNLGELATAVQEKAGVVYVLMNDKRYGVIQNIQDAQ HHHCCCEECCCCEEEEEECCCCEEEEHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCHHC YGGRRCYVDLHTPDYAQLCASLQLGHTRVSRLADLPAGLDKALAASGPFILEIDMLSIGS CCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEECCC FKTAFAGPPTKVVVAA CCHHCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]