| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is tag [H]
Identifier: 91789394
GI number: 91789394
Start: 3740974
End: 3741648
Strand: Direct
Name: tag [H]
Synonym: Bpro_3540
Alternate gene names: 91789394
Gene position: 3740974-3741648 (Clockwise)
Preceding gene: 91789391
Following gene: 91789400
Centisome position: 71.94
GC content: 64.74
Gene sequence:
>675_bases ATGACCTCTGACACCACCGCAGCTGAAAAAACAATGTCGCCCGAGGCGACCGCCGGCCTGTTCACGGACGACGTCCGCAC CGCCCGCTGCGCCTGGTGCCAGGCCACGCCGCTGTACCGCCACTACCATGACAGCGAGTGGGGATTCCCGGTGGCGGACG AGCGCCGGCTGTTCGAAAAAATATGCCTTGAAGGCTTTCAGTCGGGCCTGAGCTGGCTGACCATCCTGAACAAGCGCGAA GCCTTCCGCAGCGCTTTTGCCAATTTCGAGGCCGAACAGGTGGCCGAGTTTGGCGAGAGCGACGTCAAGCGCCTGCTGGG CGACGCCGGCATCGTGCGGCACGCCGGCAAGATTGCCTCGACCATCAACAACGCCCGGCGCGTGATCGAACTGCGCCGCG AGTTCGGATCGCTGGGCGCCTTCGTCTGGCGGCTGGAGCCCGAGGCGACCAGCCGGCCCAAGCGCATCACACAGGAAGCC GTCAGGGCCATGCCGACATCGGCCGCCTCCATCGCGCTGTCCAAAGATCTGAAAAAACGTGGCTGGACCTTTGTGGGGCC AACCACCCTGTACGCCTTCATGCAGGCCATGGGGCTGGTCAATGACCATCTGGAAGGTTGCGCCAGCCGGCAAAAGGCCC TGGCCGCCCGTGCAGCGTTCAAGCCACCGCGTTAG
Upstream 100 bases:
>100_bases CCTTCGCGTCCCTGGTGGCTTGCAAAGCCCTGTCGGCGTACCTGCATGCGGCGCCGAACATCCTTAAAAAACCACCCCAT CAAGGGGCCTAAAATTTCGT
Downstream 100 bases:
>100_bases AGCCAGAGAGATACCCTGCGCGGCATCCGCCCGCCTTTCCCCTATCCTGTCCCTACAGCCACCGTGCGCGCTTGAAGCGC CAGTAGAGCAGCGAGCAGGC
Product: DNA-3-methyladenine glycosylase I
Products: NA
Alternate protein names: 3-methyladenine-DNA glycosylase I, constitutive; TAG I; DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I [H]
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTSDTTAAEKTMSPEATAGLFTDDVRTARCAWCQATPLYRHYHDSEWGFPVADERRLFEKICLEGFQSGLSWLTILNKRE AFRSAFANFEAEQVAEFGESDVKRLLGDAGIVRHAGKIASTINNARRVIELRREFGSLGAFVWRLEPEATSRPKRITQEA VRAMPTSAASIALSKDLKKRGWTFVGPTTLYAFMQAMGLVNDHLEGCASRQKALAARAAFKPPR
Sequences:
>Translated_224_residues MTSDTTAAEKTMSPEATAGLFTDDVRTARCAWCQATPLYRHYHDSEWGFPVADERRLFEKICLEGFQSGLSWLTILNKRE AFRSAFANFEAEQVAEFGESDVKRLLGDAGIVRHAGKIASTINNARRVIELRREFGSLGAFVWRLEPEATSRPKRITQEA VRAMPTSAASIALSKDLKKRGWTFVGPTTLYAFMQAMGLVNDHLEGCASRQKALAARAAFKPPR >Mature_223_residues TSDTTAAEKTMSPEATAGLFTDDVRTARCAWCQATPLYRHYHDSEWGFPVADERRLFEKICLEGFQSGLSWLTILNKREA FRSAFANFEAEQVAEFGESDVKRLLGDAGIVRHAGKIASTINNARRVIELRREFGSLGAFVWRLEPEATSRPKRITQEAV RAMPTSAASIALSKDLKKRGWTFVGPTTLYAFMQAMGLVNDHLEGCASRQKALAARAAFKPPR
Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions [H]
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789971, Length=181, Percent_Identity=49.7237569060773, Blast_Score=186, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005019 - InterPro: IPR011257 - InterPro: IPR004597 [H]
Pfam domain/function: PF03352 Adenine_glyco [H]
EC number: =3.2.2.20 [H]
Molecular weight: Translated: 24947; Mature: 24815
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSDTTAAEKTMSPEATAGLFTDDVRTARCAWCQATPLYRHYHDSEWGFPVADERRLFEK CCCCCHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHH ICLEGFQSGLSWLTILNKREAFRSAFANFEAEQVAEFGESDVKRLLGDAGIVRHAGKIAS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH TINNARRVIELRREFGSLGAFVWRLEPEATSRPKRITQEAVRAMPTSAASIALSKDLKKR HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC GWTFVGPTTLYAFMQAMGLVNDHLEGCASRQKALAARAAFKPPR CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TSDTTAAEKTMSPEATAGLFTDDVRTARCAWCQATPLYRHYHDSEWGFPVADERRLFEK CCCCHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHH ICLEGFQSGLSWLTILNKREAFRSAFANFEAEQVAEFGESDVKRLLGDAGIVRHAGKIAS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH TINNARRVIELRREFGSLGAFVWRLEPEATSRPKRITQEAVRAMPTSAASIALSKDLKKR HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC GWTFVGPTTLYAFMQAMGLVNDHLEGCASRQKALAARAAFKPPR CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3536912; 3520491; 8041620; 9278503 [H]