| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yurN [H]
Identifier: 91789382
GI number: 91789382
Start: 3730512
End: 3731384
Strand: Reverse
Name: yurN [H]
Synonym: Bpro_3528
Alternate gene names: 91789382
Gene position: 3731384-3730512 (Counterclockwise)
Preceding gene: 91789383
Following gene: 91789381
Centisome position: 71.75
GC content: 59.22
Gene sequence:
>873_bases ATGAGCACTATCACTGTAGACCAGGTGCGCCCGTCCGCGGAGTCTGCCAGCAAGGGCATGACGTCGTGGGAACGATGGGG GATGATCCTGGTCATTCCGTACTTGCTGATTTTTCTGGTGTTTGTGATTTACCCGGTGGGCTACGGTTTGTGGCTGGCGC GGGAGCCACAAACCTACGTGCGACTTTTCGCCGATCCGATATTTTTCCGCACGATGGTCAACAGCGTCGTGTTCATCATC GTCTCGGTGAATCTGAAGATGATTGTCGCGCTGTTTCTCTCGGGCTTCTTCCTGAATACACGCTGGTGGGTCAAGTGGCT GTCGCTGGTGTTCATCCTGCCCTGGGCCGTACCCTCGATCCCGACCATCCTGTCGATGCGCTTCATGCTCAATCCCGAGT GGGGCGTGATCAACACCCTGATCTTCAAGCTGACCGGCATCGACGGCCCGAACTGGCTCAACGACCCGACGCTGGCGCTG TCGTTTTCCATGCTGGCCCACATCTGGAAATCGCTGCCCTTCTGGACCTTGATCCTGCTGGCCGGCCGCATGGCGATTCC GGCCGAACAATACGAAGCGGCGTCGGTGGATGGCGCTTCGCACTGGCAGAAGTTCCGCTTCATCACCTGGCCGTCCATGC GTTCGCTTTACCTGACGTCCACCATTTTGTCGATGATCTGGACGCTGGGCGACTTCAATAGCGTGTACCTGCTCACCGGC GGTGGCCCGGCTGACCTGACGCACGTGCTGGCCACGCTGGGCATCCGCTACCTGCGGCTAGACCAGGTCGACCTGTCGCT GGCCTCCATCGTCGTGGCGCTGCCGCTGGTGCTGCCGCTGGTCTATTTCATGATGAAACGGCTCTCGAAATGA
Upstream 100 bases:
>100_bases CCCGCATCAAGACCGTCGCGAACTAAGAGCCAAGTCTGTTCATCAAAGAAAGCCGCGCAACCGTTCCCCTCGCGGGAGCG GTTGCGCGAGGAGCGATGCC
Downstream 100 bases:
>100_bases ACCTCTACGCTTGTCGCCGCGCGTACTGCGCTGCCTCCGAGGGCGTATTTGCTCTCCTGGATGCGGCTCGTCGGAGCTCC AAATGAAACGTATCACCTTC
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSTITVDQVRPSAESASKGMTSWERWGMILVIPYLLIFLVFVIYPVGYGLWLAREPQTYVRLFADPIFFRTMVNSVVFII VSVNLKMIVALFLSGFFLNTRWWVKWLSLVFILPWAVPSIPTILSMRFMLNPEWGVINTLIFKLTGIDGPNWLNDPTLAL SFSMLAHIWKSLPFWTLILLAGRMAIPAEQYEAASVDGASHWQKFRFITWPSMRSLYLTSTILSMIWTLGDFNSVYLLTG GGPADLTHVLATLGIRYLRLDQVDLSLASIVVALPLVLPLVYFMMKRLSK
Sequences:
>Translated_290_residues MSTITVDQVRPSAESASKGMTSWERWGMILVIPYLLIFLVFVIYPVGYGLWLAREPQTYVRLFADPIFFRTMVNSVVFII VSVNLKMIVALFLSGFFLNTRWWVKWLSLVFILPWAVPSIPTILSMRFMLNPEWGVINTLIFKLTGIDGPNWLNDPTLAL SFSMLAHIWKSLPFWTLILLAGRMAIPAEQYEAASVDGASHWQKFRFITWPSMRSLYLTSTILSMIWTLGDFNSVYLLTG GGPADLTHVLATLGIRYLRLDQVDLSLASIVVALPLVLPLVYFMMKRLSK >Mature_289_residues STITVDQVRPSAESASKGMTSWERWGMILVIPYLLIFLVFVIYPVGYGLWLAREPQTYVRLFADPIFFRTMVNSVVFIIV SVNLKMIVALFLSGFFLNTRWWVKWLSLVFILPWAVPSIPTILSMRFMLNPEWGVINTLIFKLTGIDGPNWLNDPTLALS FSMLAHIWKSLPFWTLILLAGRMAIPAEQYEAASVDGASHWQKFRFITWPSMRSLYLTSTILSMIWTLGDFNSVYLLTGG GPADLTHVLATLGIRYLRLDQVDLSLASIVVALPLVLPLVYFMMKRLSK
Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787570, Length=185, Percent_Identity=30.2702702702703, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790465, Length=202, Percent_Identity=30.6930693069307, Blast_Score=83, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 33036; Mature: 32905
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTITVDQVRPSAESASKGMTSWERWGMILVIPYLLIFLVFVIYPVGYGLWLAREPQTYV CCCEEHHCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH RLFADPIFFRTMVNSVVFIIVSVNLKMIVALFLSGFFLNTRWWVKWLSLVFILPWAVPSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH PTILSMRFMLNPEWGVINTLIFKLTGIDGPNWLNDPTLALSFSMLAHIWKSLPFWTLILL HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH AGRMAIPAEQYEAASVDGASHWQKFRFITWPSMRSLYLTSTILSMIWTLGDFNSVYLLTG HCCCCCCHHHHHHCCCCCHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC GGPADLTHVLATLGIRYLRLDQVDLSLASIVVALPLVLPLVYFMMKRLSK CCHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure STITVDQVRPSAESASKGMTSWERWGMILVIPYLLIFLVFVIYPVGYGLWLAREPQTYV CCEEHHCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH RLFADPIFFRTMVNSVVFIIVSVNLKMIVALFLSGFFLNTRWWVKWLSLVFILPWAVPSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH PTILSMRFMLNPEWGVINTLIFKLTGIDGPNWLNDPTLALSFSMLAHIWKSLPFWTLILL HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH AGRMAIPAEQYEAASVDGASHWQKFRFITWPSMRSLYLTSTILSMIWTLGDFNSVYLLTG HCCCCCCHHHHHHCCCCCHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC GGPADLTHVLATLGIRYLRLDQVDLSLASIVVALPLVLPLVYFMMKRLSK CCHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]