| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789338
Identifier: 91789338
GI number: 91789338
Start: 3684259
End: 3685677
Strand: Direct
Name: 91789338
Synonym: Bpro_3484
Alternate gene names: NA
Gene position: 3684259-3685677 (Clockwise)
Preceding gene: 91789337
Following gene: 91789339
Centisome position: 70.85
GC content: 64.2
Gene sequence:
>1419_bases ATGAAAACGATTTTTCGATTGAGCGCCCTGGCCACGGCAGGCCTTGTGCTGGCAGGCTGCGCATCGGTCAACGTTGACCA GGTCGTGCGTGACACCAATGACACAACCAACACCTTTACCCAAGGCAAGCTGGAGCTCAGCCGTACCGAGCAGCAGGGGC AAGCCAGAGCCAAGCTGAGCAGTGAACTGCTGGCCAAGCCTTTAACGATGGACGATGCCGTACAGCTGGCTTTGTCCAAC AGCCCGGCCGTGCAGACCTTGTTGGCGCAAAGCTGGGCCGACATGGCCCAGGCCAACCAGGCGGGCCGGATTGCCAACCC GCTCTTCACGTTTGAACGGATGCGCTTTGGCGATGAGCTTGAGCTGGGTCGTCTGCTGTCATTTGGCCTGCTGGATATCC TGACGCTGCCGCGGCGGCAGGCCATTTCGCGCAGCCAGGGCAGGCAGGCCAAGGTGCAGCTCAGTGCCAATGTGGTCGAG CAGGTCACGCAGGTACGCCAGGCCTGGGTGCGAGCCGTGGCCGCGCAGCAGACGCTGCAATACGCAGGCCAGGTCAACAG CACCGCGCAGGCGAGTGCAGAACTTGCCCGGCGCATGCAGCAGGTGGGCAACTTCACCAAGCTGCAGCGGGCGCGCCAGC AGGTGTTCTATGCGGACGCTACCGCACAGCTGGCGTCAAGCCAGCATGCGGCCACCGCCGCCCGCGAAGAGCTGACGCGC CAGCTGGGCCTGACCGACGCGCAAGCCGGGCAATTAAAGCTGCCTGAACGCCTTCCCGACCTGCCGAAAGAACCGCGCCA GGCAGCCGTGGTGAGCGCCAACGCCACGCAGCAGCGCCTGGACGTGCAAATGGCACGTAACCAGCTCGACGTGGCGGGGC AATCCCAAGGCTTGAACTTGATCACCAGCCTTGTTGACGTGGAGCTGGGCATTCGCCGCGACACGGTGTTTGACAACGCG GCCGGCACGAGCACGCCACGCAGAGGTTACGAGCTGGGCATTCGCCTGCCAATCTTTGATTGGGGCTCCGCGCAGCGTGC CGCGATGAACGCGCAGTCGCTGGCCGCCGCCAACCGCTATGAAAGCACGGTGCGCAACGCCTCGTCACAGCTGCGGGAGA GTTATTCGGCTTACCGCACAGCCTATGACGTGGCCCGGCATTACCGCGACGAGATTGTGCCGCTGCGCAAGACCATGGCC GACGAAAACGTACTGCGCTACAACGGCATGCTGATAGGCGTGTTCGAGCTGCTGGCCGACAACCGCGAGCAGATCTCCAG CGTCATCGCCGCGATCAACGCCTATCAGCAGTTCTGGCTCGCCGATGCTGCGCTTGCCGCGTCCATGACCGGCAAGCCAA CCGCCACGCTGATGGCAGCGCCCACGTCAGGTGGCGGCGGCGACGGGGCCGGTCACTGA
Upstream 100 bases:
>100_bases AGGCCAGTCAGCCCGAGTCCGGGGCCAGGCCGCCAGCGGCTGATGTCGCGACCAAGCCCGGCCCTGGCGCAGTGCCTGCC AAACCGTGACAGGAAACGCC
Downstream 100 bases:
>100_bases TGACCCGCCGCACAGACCAATCAATGGAATCGACATGACAAACAGAAGAAATTTTTTGACCGGCGCGGGCGCACTGACCT CCGCCGTGGCCGCAGCAGCA
Product: putative copper resistance-like protein lipoprotein
Products: NA
Alternate protein names: Copper lerance Protein; Copper Resistance-Related Lipoprotein; Outer Membrane Efflux Protein Involved In Copper Resistance; Metal Ion Efflux Outer Membrane Protein; Outer Membrane Protein; Copper Resistance-Related Protein; TypeIsecretion System Outer Membrane Chanel Lipoprotein; Copper Resistance Protein; Outer Membrane Protein-Like Protein; Efflux Protein; Outer Membrane Efflux Protein Involved
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MKTIFRLSALATAGLVLAGCASVNVDQVVRDTNDTTNTFTQGKLELSRTEQQGQARAKLSSELLAKPLTMDDAVQLALSN SPAVQTLLAQSWADMAQANQAGRIANPLFTFERMRFGDELELGRLLSFGLLDILTLPRRQAISRSQGRQAKVQLSANVVE QVTQVRQAWVRAVAAQQTLQYAGQVNSTAQASAELARRMQQVGNFTKLQRARQQVFYADATAQLASSQHAATAAREELTR QLGLTDAQAGQLKLPERLPDLPKEPRQAAVVSANATQQRLDVQMARNQLDVAGQSQGLNLITSLVDVELGIRRDTVFDNA AGTSTPRRGYELGIRLPIFDWGSAQRAAMNAQSLAAANRYESTVRNASSQLRESYSAYRTAYDVARHYRDEIVPLRKTMA DENVLRYNGMLIGVFELLADNREQISSVIAAINAYQQFWLADAALAASMTGKPTATLMAAPTSGGGGDGAGH
Sequences:
>Translated_472_residues MKTIFRLSALATAGLVLAGCASVNVDQVVRDTNDTTNTFTQGKLELSRTEQQGQARAKLSSELLAKPLTMDDAVQLALSN SPAVQTLLAQSWADMAQANQAGRIANPLFTFERMRFGDELELGRLLSFGLLDILTLPRRQAISRSQGRQAKVQLSANVVE QVTQVRQAWVRAVAAQQTLQYAGQVNSTAQASAELARRMQQVGNFTKLQRARQQVFYADATAQLASSQHAATAAREELTR QLGLTDAQAGQLKLPERLPDLPKEPRQAAVVSANATQQRLDVQMARNQLDVAGQSQGLNLITSLVDVELGIRRDTVFDNA AGTSTPRRGYELGIRLPIFDWGSAQRAAMNAQSLAAANRYESTVRNASSQLRESYSAYRTAYDVARHYRDEIVPLRKTMA DENVLRYNGMLIGVFELLADNREQISSVIAAINAYQQFWLADAALAASMTGKPTATLMAAPTSGGGGDGAGH >Mature_472_residues MKTIFRLSALATAGLVLAGCASVNVDQVVRDTNDTTNTFTQGKLELSRTEQQGQARAKLSSELLAKPLTMDDAVQLALSN SPAVQTLLAQSWADMAQANQAGRIANPLFTFERMRFGDELELGRLLSFGLLDILTLPRRQAISRSQGRQAKVQLSANVVE QVTQVRQAWVRAVAAQQTLQYAGQVNSTAQASAELARRMQQVGNFTKLQRARQQVFYADATAQLASSQHAATAAREELTR QLGLTDAQAGQLKLPERLPDLPKEPRQAAVVSANATQQRLDVQMARNQLDVAGQSQGLNLITSLVDVELGIRRDTVFDNA AGTSTPRRGYELGIRLPIFDWGSAQRAAMNAQSLAAANRYESTVRNASSQLRESYSAYRTAYDVARHYRDEIVPLRKTMA DENVLRYNGMLIGVFELLADNREQISSVIAAINAYQQFWLADAALAASMTGKPTATLMAAPTSGGGGDGAGH
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51252; Mature: 51252
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIFRLSALATAGLVLAGCASVNVDQVVRDTNDTTNTFTQGKLELSRTEQQGQARAKLS CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SELLAKPLTMDDAVQLALSNSPAVQTLLAQSWADMAQANQAGRIANPLFTFERMRFGDEL HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH ELGRLLSFGLLDILTLPRRQAISRSQGRQAKVQLSANVVEQVTQVRQAWVRAVAAQQTLQ HHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH YAGQVNSTAQASAELARRMQQVGNFTKLQRARQQVFYADATAQLASSQHAATAAREELTR HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLGLTDAQAGQLKLPERLPDLPKEPRQAAVVSANATQQRLDVQMARNQLDVAGQSQGLNL HHCCCCCCCCCCCCHHHCCCCCCCCCHHEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHH ITSLVDVELGIRRDTVFDNAAGTSTPRRGYELGIRLPIFDWGSAQRAAMNAQSLAAANRY HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHH ESTVRNASSQLRESYSAYRTAYDVARHYRDEIVPLRKTMADENVLRYNGMLIGVFELLAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCC NREQISSVIAAINAYQQFWLADAALAASMTGKPTATLMAAPTSGGGGDGAGH CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MKTIFRLSALATAGLVLAGCASVNVDQVVRDTNDTTNTFTQGKLELSRTEQQGQARAKLS CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SELLAKPLTMDDAVQLALSNSPAVQTLLAQSWADMAQANQAGRIANPLFTFERMRFGDEL HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH ELGRLLSFGLLDILTLPRRQAISRSQGRQAKVQLSANVVEQVTQVRQAWVRAVAAQQTLQ HHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH YAGQVNSTAQASAELARRMQQVGNFTKLQRARQQVFYADATAQLASSQHAATAAREELTR HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLGLTDAQAGQLKLPERLPDLPKEPRQAAVVSANATQQRLDVQMARNQLDVAGQSQGLNL HHCCCCCCCCCCCCHHHCCCCCCCCCHHEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHH ITSLVDVELGIRRDTVFDNAAGTSTPRRGYELGIRLPIFDWGSAQRAAMNAQSLAAANRY HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHH ESTVRNASSQLRESYSAYRTAYDVARHYRDEIVPLRKTMADENVLRYNGMLIGVFELLAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCC NREQISSVIAAINAYQQFWLADAALAASMTGKPTATLMAAPTSGGGGDGAGH CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA