| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is copA [H]
Identifier: 91789339
GI number: 91789339
Start: 3685712
End: 3687127
Strand: Direct
Name: copA [H]
Synonym: Bpro_3485
Alternate gene names: 91789339
Gene position: 3685712-3687127 (Clockwise)
Preceding gene: 91789338
Following gene: 91789340
Centisome position: 70.88
GC content: 61.37
Gene sequence:
>1416_bases ATGACAAACAGAAGAAATTTTTTGACCGGCGCGGGCGCACTGACCTCCGCCGTGGCCGCAGCAGCAGTCAGCCGGGTGGC GATGGCCGCCCTGCCGGAACCGGTCCTGCAGACAAAACCCGACACCATGCCGCCGCTCGTTCCCGCCACGGGCCGCCCCT ACAACCCGGTGGTCACGCTCAATGGCTGGACGCTGCCCTGGCGCATGAACAATGGCGTCAAGGAATTCCACCTGGTGGCC GAACCGGTGGTGCGCGAGATGTCACCCGGATTCAAGGCGCACCTCTGGGGCTACAACGGCCAGAGCCCCGGCCCGACCAT TGAAGTGGTGGAAGGCGACCGGGTGCGCATTTTTGTTACCAACAAGCTGCCCGAGCACACCAGCATTCACTGGCACGGCC AGCGCCTGCCCAACGGCATGGACGGCGTGGCGGGCCTGACCCAGCCCGCCATTCCGGTCGGCAAGACCTTTGTCTACGAA TTCGTGGCCCGGCGCCCGGGCACCTTTATGTACCATCCGCATGCCGACGAGATGACGCAGATGGCCATGGGCATGATGGG CTTCTGGATCACCCACCCGAAAGCGAAGCATCCGCTGATCGACGAGGTCAACCGTGACTTCGTGTTCCTGCTCAATGCCT ATGACATAGACCCCGGCGCCTACACGCCCAAGATCATGACCATGCTCGACTTCAACCTCTGGAGCTGGAACAGCCGGGTC TTTCCGGGCATTGACCCGCTGGTGGTGCGCAAGAACGACAAGGTGCGCATCCGCATCGGCAACCTGACCATGACCAATCA CCCGATGCACCTGCATGGGCATGAGTTTCTGGTGACCGGCACCGATGGCGGCCCCACCCCAAAATCAACCCGCTGGCCCG AGGTGACGACCGATGTCGCTGTCGGCCAGATGCGGCAAATCGAGTTCCTGGCCGACGAAGAGGGCGACTGGGCTTTTCAC TGCCACAAGAGCCACCACACCATGAACGCCATGGGCCATGACGTGCCGACCCTCATTGGCGTAGACCACCGCAAAGTGGT GAAGGACATCACCAACGTCATCCCCGACTACATGGTGATGGGCGAGCGCGGCATGGCCGACATGGCCGAGATGGAAATGC CTTTGCCGGACAACACCGAAAGGATGATGACCGGCGCAGGCCCCTTCGGCTCAGTCGAAATGGGCGGCATGTTCAGCATG GTCAAGGTACGCAAAGACCAAAAACCCGGCGACTACAAAGACCCTGGCTGGTACAAGCACCCGGTGGGTGAAGTCGCCTA TGAATGGACAGGTTCGCTGCCCAATCCGGCACGCTTTGCAGCCGAGGGCGGCCAATCCATGAAAGCACAGAACATGCCCC TGAAAGAAGTCGAAGTTCAGGTCCGCAAGCCCTCCATGGGCAACATGAAGCATTGA
Upstream 100 bases:
>100_bases AAGCCAACCGCCACGCTGATGGCAGCGCCCACGTCAGGTGGCGGCGGCGACGGGGCCGGTCACTGATGACCCGCCGCACA GACCAATCAATGGAATCGAC
Downstream 100 bases:
>100_bases CAGAGTTGAAGCAATATCCTGGAGGAAATGTCATGAAAATTGTCATGAAAATCTCAAAAGCCACTCAAAAAGCCACTCAA TTAGCAGCGGCGTGCACCCT
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MTNRRNFLTGAGALTSAVAAAAVSRVAMAALPEPVLQTKPDTMPPLVPATGRPYNPVVTLNGWTLPWRMNNGVKEFHLVA EPVVREMSPGFKAHLWGYNGQSPGPTIEVVEGDRVRIFVTNKLPEHTSIHWHGQRLPNGMDGVAGLTQPAIPVGKTFVYE FVARRPGTFMYHPHADEMTQMAMGMMGFWITHPKAKHPLIDEVNRDFVFLLNAYDIDPGAYTPKIMTMLDFNLWSWNSRV FPGIDPLVVRKNDKVRIRIGNLTMTNHPMHLHGHEFLVTGTDGGPTPKSTRWPEVTTDVAVGQMRQIEFLADEEGDWAFH CHKSHHTMNAMGHDVPTLIGVDHRKVVKDITNVIPDYMVMGERGMADMAEMEMPLPDNTERMMTGAGPFGSVEMGGMFSM VKVRKDQKPGDYKDPGWYKHPVGEVAYEWTGSLPNPARFAAEGGQSMKAQNMPLKEVEVQVRKPSMGNMKH
Sequences:
>Translated_471_residues MTNRRNFLTGAGALTSAVAAAAVSRVAMAALPEPVLQTKPDTMPPLVPATGRPYNPVVTLNGWTLPWRMNNGVKEFHLVA EPVVREMSPGFKAHLWGYNGQSPGPTIEVVEGDRVRIFVTNKLPEHTSIHWHGQRLPNGMDGVAGLTQPAIPVGKTFVYE FVARRPGTFMYHPHADEMTQMAMGMMGFWITHPKAKHPLIDEVNRDFVFLLNAYDIDPGAYTPKIMTMLDFNLWSWNSRV FPGIDPLVVRKNDKVRIRIGNLTMTNHPMHLHGHEFLVTGTDGGPTPKSTRWPEVTTDVAVGQMRQIEFLADEEGDWAFH CHKSHHTMNAMGHDVPTLIGVDHRKVVKDITNVIPDYMVMGERGMADMAEMEMPLPDNTERMMTGAGPFGSVEMGGMFSM VKVRKDQKPGDYKDPGWYKHPVGEVAYEWTGSLPNPARFAAEGGQSMKAQNMPLKEVEVQVRKPSMGNMKH >Mature_470_residues TNRRNFLTGAGALTSAVAAAAVSRVAMAALPEPVLQTKPDTMPPLVPATGRPYNPVVTLNGWTLPWRMNNGVKEFHLVAE PVVREMSPGFKAHLWGYNGQSPGPTIEVVEGDRVRIFVTNKLPEHTSIHWHGQRLPNGMDGVAGLTQPAIPVGKTFVYEF VARRPGTFMYHPHADEMTQMAMGMMGFWITHPKAKHPLIDEVNRDFVFLLNAYDIDPGAYTPKIMTMLDFNLWSWNSRVF PGIDPLVVRKNDKVRIRIGNLTMTNHPMHLHGHEFLVTGTDGGPTPKSTRWPEVTTDVAVGQMRQIEFLADEEGDWAFHC HKSHHTMNAMGHDVPTLIGVDHRKVVKDITNVIPDYMVMGERGMADMAEMEMPLPDNTERMMTGAGPFGSVEMGGMFSMV KVRKDQKPGDYKDPGWYKHPVGEVAYEWTGSLPNPARFAAEGGQSMKAQNMPLKEVEVQVRKPSMGNMKH
Specific function: Could be involved in copper resistance. May have oxidase activity [H]
COG id: COG2132
COG function: function code Q; Putative multicopper oxidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multicopper oxidase family. CopA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786314, Length=103, Percent_Identity=36.8932038834951, Blast_Score=63, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323703, Length=96, Percent_Identity=45.8333333333333, Blast_Score=67, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6321067, Length=105, Percent_Identity=40.9523809523809, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI18859919, Length=104, Percent_Identity=41.3461538461538, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574104, Length=116, Percent_Identity=40.5172413793103, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001117 - InterPro: IPR011706 - InterPro: IPR011707 - InterPro: IPR006376 - InterPro: IPR002355 - InterPro: IPR008972 - InterPro: IPR006311 [H]
Pfam domain/function: PF00394 Cu-oxidase; PF07731 Cu-oxidase_2; PF07732 Cu-oxidase_3 [H]
EC number: NA
Molecular weight: Translated: 52535; Mature: 52404
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: PS00080 MULTICOPPER_OXIDASE2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 7.2 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 7.0 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNRRNFLTGAGALTSAVAAAAVSRVAMAALPEPVLQTKPDTMPPLVPATGRPYNPVVTL CCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEE NGWTLPWRMNNGVKEFHLVAEPVVREMSPGFKAHLWGYNGQSPGPTIEVVEGDRVRIFVT CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEE NKLPEHTSIHWHGQRLPNGMDGVAGLTQPAIPVGKTFVYEFVARRPGTFMYHPHADEMTQ CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHH MAMGMMGFWITHPKAKHPLIDEVNRDFVFLLNAYDIDPGAYTPKIMTMLDFNLWSWNSRV HHHHHHHHEEECCCCCCCCHHHCCCCEEEEEEEEECCCCCCCCEEEEEEECEEECCCCEE FPGIDPLVVRKNDKVRIRIGNLTMTNHPMHLHGHEFLVTGTDGGPTPKSTRWPEVTTDVA CCCCCEEEEECCCEEEEEECCEEEECCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHHH VGQMRQIEFLADEEGDWAFHCHKSHHTMNAMGHDVPTLIGVDHRKVVKDITNVIPDYMVM HCCCEEEEEEECCCCCEEEEEECCCCCHHHCCCCCCEEECCCHHHHHHHHHHHCCHHEEE GERGMADMAEMEMPLPDNTERMMTGAGPFGSVEMGGMFSMVKVRKDQKPGDYKDPGWYKH CCCCCHHHHHCCCCCCCCHHHHEECCCCCCCEECCCCEEEEHHHCCCCCCCCCCCCCCCC PVGEVAYEWTGSLPNPARFAAEGGQSMKAQNMPLKEVEVQVRKPSMGNMKH CHHHHHHEECCCCCCCHHHHHCCCCCCCCCCCCHHHEEEEEECCCCCCCCC >Mature Secondary Structure TNRRNFLTGAGALTSAVAAAAVSRVAMAALPEPVLQTKPDTMPPLVPATGRPYNPVVTL CCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEE NGWTLPWRMNNGVKEFHLVAEPVVREMSPGFKAHLWGYNGQSPGPTIEVVEGDRVRIFVT CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEE NKLPEHTSIHWHGQRLPNGMDGVAGLTQPAIPVGKTFVYEFVARRPGTFMYHPHADEMTQ CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHH MAMGMMGFWITHPKAKHPLIDEVNRDFVFLLNAYDIDPGAYTPKIMTMLDFNLWSWNSRV HHHHHHHHEEECCCCCCCCHHHCCCCEEEEEEEEECCCCCCCCEEEEEEECEEECCCCEE FPGIDPLVVRKNDKVRIRIGNLTMTNHPMHLHGHEFLVTGTDGGPTPKSTRWPEVTTDVA CCCCCEEEEECCCEEEEEECCEEEECCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHHH VGQMRQIEFLADEEGDWAFHCHKSHHTMNAMGHDVPTLIGVDHRKVVKDITNVIPDYMVM HCCCEEEEEEECCCCCEEEEEECCCCCHHHCCCCCCEEECCCHHHHHHHHHHHCCHHEEE GERGMADMAEMEMPLPDNTERMMTGAGPFGSVEMGGMFSMVKVRKDQKPGDYKDPGWYKH CCCCCHHHHHCCCCCCCCHHHHEECCCCCCCEECCCCEEEEHHHCCCCCCCCCCCCCCCC PVGEVAYEWTGSLPNPARFAAEGGQSMKAQNMPLKEVEVQVRKPSMGNMKH CHHHHHHEECCCCCCCHHHHHCCCCCCCCCCCCHHHEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12928499 [H]