| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789245
Identifier: 91789245
GI number: 91789245
Start: 3582930
End: 3583502
Strand: Reverse
Name: 91789245
Synonym: Bpro_3389
Alternate gene names: NA
Gene position: 3583502-3582930 (Counterclockwise)
Preceding gene: 91789246
Following gene: 91789243
Centisome position: 68.91
GC content: 62.83
Gene sequence:
>573_bases ATGTCGTTTTTTCAAATGTCCACGCCCATCGCTGCACGGCGACTTTTTTTGGGCCGCTCCGGCGGTCTGGTCTTGTCGGG GGCAGCGATTGCGCTGCTTGCAGGCAATGACGCGCTGGCCGCCAAGGCGGGCGGCTCCAAAGCCGGCGACGTGCAAATTC TCAACACCGCCATCGGCGCCGAACTGGAGGCCATCGCGGCCTATCAGCTGGGCGCAGAAAGCAAGCTGCTCACCAAGCCC GTGCTCGATCTCGCCGTCACGTTTCAGGGACACCATAAAGCGCATGTGGCGCTGCTCTCCGGCACGGTCGAAAAGCTGGG CGGCAAACCCGTCATCGCCAAAACCAAATACAACTTTCCGGTGGACCAGCTGAAAACAGAGCTGGATGTGCTCAAGTTCG CCGCCCAGCTGGAGCAGGGCGCCGTGAGTGCCTACCTGGGGGCCGTGCCCCTGTTTGCCAACCGCGACTTGTCCAAGGCG GCCGCCAGTATTCTGGGCGACGAAGCCATGCACTGGGCCATCCTGCGCCAGGCCATTGGCGAAGCCCCCGTGCCGTCGGC TTTTGTGTCGTGA
Upstream 100 bases:
>100_bases GCGGGCGTGCTGGCAAAGATTGCCCACGAGCGTGAATCCTCTCGCCCGTGATCCGTGAAGTCCGTTATTTGTGAACCGTT TTTGTCCACTGGAGATTGCC
Downstream 100 bases:
>100_bases AGCCGCGGCGCCACGCGCTGGCCACCGACCGCGCCGGCTCGTGTCATGGCCTGCGGTGGTGATGCTTCAGGCCGTTCCCC AAACCTCCTGCGCCGTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MSFFQMSTPIAARRLFLGRSGGLVLSGAAIALLAGNDALAAKAGGSKAGDVQILNTAIGAELEAIAAYQLGAESKLLTKP VLDLAVTFQGHHKAHVALLSGTVEKLGGKPVIAKTKYNFPVDQLKTELDVLKFAAQLEQGAVSAYLGAVPLFANRDLSKA AASILGDEAMHWAILRQAIGEAPVPSAFVS
Sequences:
>Translated_190_residues MSFFQMSTPIAARRLFLGRSGGLVLSGAAIALLAGNDALAAKAGGSKAGDVQILNTAIGAELEAIAAYQLGAESKLLTKP VLDLAVTFQGHHKAHVALLSGTVEKLGGKPVIAKTKYNFPVDQLKTELDVLKFAAQLEQGAVSAYLGAVPLFANRDLSKA AASILGDEAMHWAILRQAIGEAPVPSAFVS >Mature_189_residues SFFQMSTPIAARRLFLGRSGGLVLSGAAIALLAGNDALAAKAGGSKAGDVQILNTAIGAELEAIAAYQLGAESKLLTKPV LDLAVTFQGHHKAHVALLSGTVEKLGGKPVIAKTKYNFPVDQLKTELDVLKFAAQLEQGAVSAYLGAVPLFANRDLSKAA ASILGDEAMHWAILRQAIGEAPVPSAFVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19649; Mature: 19518
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFFQMSTPIAARRLFLGRSGGLVLSGAAIALLAGNDALAAKAGGSKAGDVQILNTAIGA CCCCCCCCCHHHHHHHHCCCCCEEEECCEEEEEECCCEEEECCCCCCCCCEEEEHHHHCC ELEAIAAYQLGAESKLLTKPVLDLAVTFQGHHKAHVALLSGTVEKLGGKPVIAKTKYNFP HHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEECCCC VDQLKTELDVLKFAAQLEQGAVSAYLGAVPLFANRDLSKAAASILGDEAMHWAILRQAIG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC EAPVPSAFVS CCCCCHHHCC >Mature Secondary Structure SFFQMSTPIAARRLFLGRSGGLVLSGAAIALLAGNDALAAKAGGSKAGDVQILNTAIGA CCCCCCCCHHHHHHHHCCCCCEEEECCEEEEEECCCEEEECCCCCCCCCEEEEHHHHCC ELEAIAAYQLGAESKLLTKPVLDLAVTFQGHHKAHVALLSGTVEKLGGKPVIAKTKYNFP HHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEECCCC VDQLKTELDVLKFAAQLEQGAVSAYLGAVPLFANRDLSKAAASILGDEAMHWAILRQAIG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC EAPVPSAFVS CCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA