| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is vanA [H]
Identifier: 91789243
GI number: 91789243
Start: 3580477
End: 3581586
Strand: Reverse
Name: vanA [H]
Synonym: Bpro_3387
Alternate gene names: 91789243
Gene position: 3581586-3580477 (Counterclockwise)
Preceding gene: 91789245
Following gene: 91789242
Centisome position: 68.87
GC content: 63.51
Gene sequence:
>1110_bases ATGAAAGCCGAAAAACCCTCCTTTCCGCTCAACGCTTGGTACGCCGCGGCCTATGACGTGGAAGTCGTGCGTGCGCTGTT GCCACGCACCATCTGCAAGCAAAAACTGGTGATGTTCCGCAAGACCGACGGCACAGTGGCCGCGCTGGAAGACGCCTGCT GGCACCGGCTGCTGCCGCTGTCCATGGGCCGCCTCGACGGCGATGAGCTCACCTGCGGCTACCACGGCCTGGTCTACAAC GCCCAGGGGCGCTGCACCCACATGCCGAGCCAGGAAACACTGAACCCTTCGGCCTGTGTGCGGGCTTACCCGGTGCTCGA AAAACACCGCTTTGTCTGGGTCTGGCCGGGTGATCCGGCCAAGGCCGACCCGGCGTTGGTGCCCGACCTGCACTGGAACG ACGATGCCGAATGGGCGGGCGACGGAAAAATGATCAAGGTGAAATGCGACTACCGCCTGGTGGTGGACAACCTGATGGAC CTCACGCATGAGACCTTTGTGCACAGCTCCAGCATTGGCCAGCGTGCGGTGGCCGAGGCGCCCTTCGTAGCCACGCACGG CGACCGCACGGCCACCGTGACGCGCTGGATGGAAAATATTGACGCGCCGCCTTTCTGGGCCGGGCAGATCAATCACTCCC TGGGTTACCAGGGCCCAGTGGACCGCTGGCAGGTCATCAAATTTGAAGCGCCCTGCACCGTGACGATTGACGTGGGTGTG GCCGAGGCCGGCACCGGCGCCGTGCCGCCCGGCGGCAATGCAGGCGATGCGTGCTTGAGCAACCGCAGCAGGGGCGTCAA CGGCTTTGTGCTCAATACCATCACGCCCGAGACCGACGGCACTTGCCACTACTTCTGGGCCTTCGCCCGCAACTACTGTC TGGGCGAGCAGCGCCTCACGCATCAGTTGCGCGAGGGCGTGGCCAGCATCTTCCGCGAAGACGAGCATGTGCTGGAAGCG CAGCAGATCGCCATGGACGAACACCCGGACCACCAGTTCTACAACCTCAACATCGACGCCGGCTCGATGTGGGCCCGCAA GCTGATCGACAAGATGATCAGCAAAGAGGCGCGACCTTCGGCAGTGATCCCCATCAGGAGTGCGGCATGA
Upstream 100 bases:
>100_bases CATTGATCAACTCTTTCAATGAATACAAAAACTGGTGAAAACACCTAGAAATGGCTATTTCCAGTTGATTTTTCGTCTTT TATGTATACAGTGCGTATCC
Downstream 100 bases:
>100_bases ACCTCTCTGTCATTGCGGGCCTGACCCGCAATCCATGCCACGCCTGCCGCGTTGGCCTGACAGCCTGGATGCCGGGTCAA GCCCGGCATGACAGCGTATG
Product: Rieske (2Fe-2S) domain-containing protein
Products: NA
Alternate protein names: 4-hydroxy-3-methoxybenzoate demethylase [H]
Number of amino acids: Translated: 369; Mature: 369
Protein sequence:
>369_residues MKAEKPSFPLNAWYAAAYDVEVVRALLPRTICKQKLVMFRKTDGTVAALEDACWHRLLPLSMGRLDGDELTCGYHGLVYN AQGRCTHMPSQETLNPSACVRAYPVLEKHRFVWVWPGDPAKADPALVPDLHWNDDAEWAGDGKMIKVKCDYRLVVDNLMD LTHETFVHSSSIGQRAVAEAPFVATHGDRTATVTRWMENIDAPPFWAGQINHSLGYQGPVDRWQVIKFEAPCTVTIDVGV AEAGTGAVPPGGNAGDACLSNRSRGVNGFVLNTITPETDGTCHYFWAFARNYCLGEQRLTHQLREGVASIFREDEHVLEA QQIAMDEHPDHQFYNLNIDAGSMWARKLIDKMISKEARPSAVIPIRSAA
Sequences:
>Translated_369_residues MKAEKPSFPLNAWYAAAYDVEVVRALLPRTICKQKLVMFRKTDGTVAALEDACWHRLLPLSMGRLDGDELTCGYHGLVYN AQGRCTHMPSQETLNPSACVRAYPVLEKHRFVWVWPGDPAKADPALVPDLHWNDDAEWAGDGKMIKVKCDYRLVVDNLMD LTHETFVHSSSIGQRAVAEAPFVATHGDRTATVTRWMENIDAPPFWAGQINHSLGYQGPVDRWQVIKFEAPCTVTIDVGV AEAGTGAVPPGGNAGDACLSNRSRGVNGFVLNTITPETDGTCHYFWAFARNYCLGEQRLTHQLREGVASIFREDEHVLEA QQIAMDEHPDHQFYNLNIDAGSMWARKLIDKMISKEARPSAVIPIRSAA >Mature_369_residues MKAEKPSFPLNAWYAAAYDVEVVRALLPRTICKQKLVMFRKTDGTVAALEDACWHRLLPLSMGRLDGDELTCGYHGLVYN AQGRCTHMPSQETLNPSACVRAYPVLEKHRFVWVWPGDPAKADPALVPDLHWNDDAEWAGDGKMIKVKCDYRLVVDNLMD LTHETFVHSSSIGQRAVAEAPFVATHGDRTATVTRWMENIDAPPFWAGQINHSLGYQGPVDRWQVIKFEAPCTVTIDVGV AEAGTGAVPPGGNAGDACLSNRSRGVNGFVLNTITPETDGTCHYFWAFARNYCLGEQRLTHQLREGVASIFREDEHVLEA QQIAMDEHPDHQFYNLNIDAGSMWARKLIDKMISKEARPSAVIPIRSAA
Specific function: Unknown
COG id: COG4638
COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017941 - InterPro: IPR015881 [H]
Pfam domain/function: PF00355 Rieske [H]
EC number: =1.14.13.82 [H]
Molecular weight: Translated: 41043; Mature: 41043
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAEKPSFPLNAWYAAAYDVEVVRALLPRTICKQKLVMFRKTDGTVAALEDACWHRLLPL CCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHH SMGRLDGDELTCGYHGLVYNAQGRCTHMPSQETLNPSACVRAYPVLEKHRFVWVWPGDPA HCCCCCCCEEEECCCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC KADPALVPDLHWNDDAEWAGDGKMIKVKCDYRLVVDNLMDLTHETFVHSSSIGQRAVAEA CCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC PFVATHGDRTATVTRWMENIDAPPFWAGQINHSLGYQGPVDRWQVIKFEAPCTVTIDVGV CEEEECCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCE AEAGTGAVPPGGNAGDACLSNRSRGVNGFVLNTITPETDGTCHYFWAFARNYCLGEQRLT ECCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCHHHHH HQLREGVASIFREDEHVLEAQQIAMDEHPDHQFYNLNIDAGSMWARKLIDKMISKEARPS HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCC AVIPIRSAA EEEEECCCC >Mature Secondary Structure MKAEKPSFPLNAWYAAAYDVEVVRALLPRTICKQKLVMFRKTDGTVAALEDACWHRLLPL CCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHH SMGRLDGDELTCGYHGLVYNAQGRCTHMPSQETLNPSACVRAYPVLEKHRFVWVWPGDPA HCCCCCCCEEEECCCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC KADPALVPDLHWNDDAEWAGDGKMIKVKCDYRLVVDNLMDLTHETFVHSSSIGQRAVAEA CCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC PFVATHGDRTATVTRWMENIDAPPFWAGQINHSLGYQGPVDRWQVIKFEAPCTVTIDVGV CEEEECCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCE AEAGTGAVPPGGNAGDACLSNRSRGVNGFVLNTITPETDGTCHYFWAFARNYCLGEQRLT ECCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCHHHHH HQLREGVASIFREDEHVLEAQQIAMDEHPDHQFYNLNIDAGSMWARKLIDKMISKEARPS HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCC AVIPIRSAA EEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9098058 [H]