| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789240
Identifier: 91789240
GI number: 91789240
Start: 3577286
End: 3578458
Strand: Reverse
Name: 91789240
Synonym: Bpro_3384
Alternate gene names: NA
Gene position: 3578458-3577286 (Counterclockwise)
Preceding gene: 91789241
Following gene: 91789239
Centisome position: 68.81
GC content: 63.26
Gene sequence:
>1173_bases ATGAACAAAAGAACCTTTATCCAGGCAGCCGTGATGGCCACCGTGGCGCTCGCCGGCGCGCAAGCTCTCGCGCAGGACAA CAAGTTCAGGATAGGCCTGCTCCTGCCGATGACGGGGCCCTTCGCTTCCACGGGCCGGCAGATTGAAGCGGCAGCCAAGC TCTACATGGCGCAGAACGGCGACACCGTCGCCGGCAAGAAGGTCGAGCTGATCATCAAGGACGACACCGGAACACCCGAC GTCACCAAGCGCCTGGCGCAGGAAATGATCGTCAACGACAAGGTCAATGTGCTGGCCGGCTTCGGCCTGACGCCGCTGGC ACTGGCCACGGCCCCGCTGGCCACGCAGTCCAAAACACCGATGGTGGTGATGGCGGCGGCCACCTCCAGCATCACCCAGG CTTCGCCCTACATCGTGCGCACCAGCTTCACGCTGCCGCAGGTCACCATTGGGGTGGCCGACTGGGCACCCAGGAACGGC ATCAAGAAGGTCGTGAGCCTGGTGTCGGACTATGGGCCCGGCATTGATGCCGAGCGCACCTTCAAGGACCGCTTCACCTT CAACGGCGGCACGGTGGTGGACGCCGTGCGCGTGCCGCTGCGCAACCCCGACTTCGCGCCCTTCCTGCAGAAAGTGCGTG ATGCCAAGCCCGATGCGGTGTTTGCCTTTGTGCCCTCCGGTGCCGGCTCGGCGCTGATGAAGCAGTTTGCCGAGCGCGGC CTGGACAAGGCCGGCATCAAGCTGATCGCCACCGGCGACGTGACCGATGACGACATCCTGAACGACATGGGCGAGGTGGC CGTGGGGGTGGTGACCTCGCACCACTATTCGGCGGCCCACAAATCACCGTTGAACCAGAAGTTTGTCGAAGCCTTCGGCA AGGCCAACAAGGGACTGCGGCCCAATTTCATGGCCGTGGGCGGCTATGACGGCATGCGCGTGATCTACGAAGCCCTGAAA ACCACCAAGGGCGCCGGCGGCGGCGAGGCCTTGCTTGCTGCCATGAAGGGCCAGGTGTTCGAGAGCCCGCGCGGCCCGAT CTTTGTCGACGCGCAATCGCGTGACATTGTGCAAAACGTCTACATCCGCAAGGTCGAGAAAGTCGGCGGCCAGCTCTACA ACGTCGAATTCGAAACCATCAAGGATGTGAAAGACCCGGGCAAGGCCAGGTAA
Upstream 100 bases:
>100_bases GAGGGCCCTAACACTGCACTCCCGATACCGTTTTCGAATCCGCTTTTATCCCGTTTTGATCCCGTTCGATTGAGTTCGCA TTAATTACCAGGAGACATCC
Downstream 100 bases:
>100_bases AACGGGTATGTCATTGGGGTCTGACCCGCAATCCATCGCCGTGTACACGCCAGGATGGATGCCGGGTCAAGCCCGGCATG ACAGCTATTTTGGTTGCTTG
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTGTPD VTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNG IKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALK TTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKDPGKAR
Sequences:
>Translated_390_residues MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTGTPD VTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNG IKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALK TTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKDPGKAR >Mature_390_residues MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTGTPD VTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNG IKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALK TTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKDPGKAR
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 41580; Mature: 41580
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNG CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHEECCC DTVAGKKVELIIKDDTGTPDVTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTP CEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCCCCCCCC MVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNGIKKVVSLVSDYGPGIDAERT EEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHH FKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG HHHHEEECCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLR CCHHCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCC PNFMAVGGYDGMRVIYEALKTTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNV CCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH YIRKVEKVGGQLYNVEFETIKDVKDPGKAR HHHHHHHHCCEEEEEEHHHHHCCCCCCCCC >Mature Secondary Structure MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNG CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHEECCC DTVAGKKVELIIKDDTGTPDVTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTP CEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCCCCCCCC MVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNGIKKVVSLVSDYGPGIDAERT EEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHH FKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG HHHHEEECCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLR CCHHCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCC PNFMAVGGYDGMRVIYEALKTTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNV CCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH YIRKVEKVGGQLYNVEFETIKDVKDPGKAR HHHHHHHHCCEEEEEEHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA