The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is rbsA2 [H]

Identifier: 91789065

GI number: 91789065

Start: 3390728

End: 3391546

Strand: Direct

Name: rbsA2 [H]

Synonym: Bpro_3205

Alternate gene names: 91789065

Gene position: 3390728-3391546 (Clockwise)

Preceding gene: 91789064

Following gene: 91789066

Centisome position: 65.2

GC content: 65.69

Gene sequence:

>819_bases
ATGAATACCACCTCACCCAACCACTCACCCAACGCCTCCTCCCCTCTGGTCATGCAGGCCCGGGGCCTGGTCAAACGCTA
CGGCCAGGTGACTGCGCTGGACGGCACCGACTTTGAGCTGCGCGCCGGTGAAATCCTGGCGGTGATCGGTGACAACGGCG
CCGGCAAGTCCTCCCTGATCAAGGCCCTGTCGGGGGCGACCGTGCCCGACGAAGGCGAGTTGCTGCTGGACGGCAAGCCG
GTGCGCTTCAAGTCCCCCATCGATGCACGCCGGGCCGGCATAGAGACCGTCTACCAGGACCTGGCCGTTGCCCCGGCCAT
GAGCATTGCCGAAAACCTGTTCCTCGGCCGTGAGCTCATCAAGACCAGAGGCCTTGGCAAACTGCTGCACCTGCTCGACA
AGAAGCGGATGCTGGAGCAGGCCATTGCCCGCATGCAGGAGCTCAAGGTCGGGATTCGCTCGATGACGCAAGCGGTGGAG
ACGCTCTCCGGCGGCCAGCGCCAGTGCGTGGCCGTGGCGCGCGCCGCTGCCTTCGCACAGCACGTGGTGATCATGGACGA
GCCCACGGCCGCGCTGGGCGTGAAGGAAGGCAACATGGTGCTGGAGCTGATTCGCCGGGTGCGCGACAAGGGCCTGCCCG
TGATCCTGATCAGCCACAACATGCCGCATGTGTTCGAGGTGGCCGACCGCATCCATATCCAGCGCCTGGGCCGGCGTGCG
GCCGTCGTCAACCCCAAAACCATCAGCATGAGCGATACCGTCGCCGTGATGACTGGCGCCAAGACGGCCGAAGAACTGCC
GCAGGCCGCACTGGCCTGA

Upstream 100 bases:

>100_bases
CGCTGATGGGCGTTGCCTCCGTTTATCAAACGCTGATCACCGGCATCCTGGTGATCCTCGCAGTCGCTGCTGACCAGATG
TCGCGCAAGGGGCCCCGCTG

Downstream 100 bases:

>100_bases
ACGCCTGTTCGCACTCAACCTGACCATGAGATTGCCCCATGCTTAAAGGCATCGACTCCCTGCTCACCCCCGAGTTGCTC
AAGCTGCTGGCCGAAATGGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MNTTSPNHSPNASSPLVMQARGLVKRYGQVTALDGTDFELRAGEILAVIGDNGAGKSSLIKALSGATVPDEGELLLDGKP
VRFKSPIDARRAGIETVYQDLAVAPAMSIAENLFLGRELIKTRGLGKLLHLLDKKRMLEQAIARMQELKVGIRSMTQAVE
TLSGGQRQCVAVARAAAFAQHVVIMDEPTAALGVKEGNMVLELIRRVRDKGLPVILISHNMPHVFEVADRIHIQRLGRRA
AVVNPKTISMSDTVAVMTGAKTAEELPQAALA

Sequences:

>Translated_272_residues
MNTTSPNHSPNASSPLVMQARGLVKRYGQVTALDGTDFELRAGEILAVIGDNGAGKSSLIKALSGATVPDEGELLLDGKP
VRFKSPIDARRAGIETVYQDLAVAPAMSIAENLFLGRELIKTRGLGKLLHLLDKKRMLEQAIARMQELKVGIRSMTQAVE
TLSGGQRQCVAVARAAAFAQHVVIMDEPTAALGVKEGNMVLELIRRVRDKGLPVILISHNMPHVFEVADRIHIQRLGRRA
AVVNPKTISMSDTVAVMTGAKTAEELPQAALA
>Mature_272_residues
MNTTSPNHSPNASSPLVMQARGLVKRYGQVTALDGTDFELRAGEILAVIGDNGAGKSSLIKALSGATVPDEGELLLDGKP
VRFKSPIDARRAGIETVYQDLAVAPAMSIAENLFLGRELIKTRGLGKLLHLLDKKRMLEQAIARMQELKVGIRSMTQAVE
TLSGGQRQCVAVARAAAFAQHVVIMDEPTAALGVKEGNMVLELIRRVRDKGLPVILISHNMPHVFEVADRIHIQRLGRRA
AVVNPKTISMSDTVAVMTGAKTAEELPQAALA

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=226, Percent_Identity=30.0884955752212, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI42741659, Length=221, Percent_Identity=28.9592760180996, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4505771, Length=222, Percent_Identity=28.8288288288288, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9961252, Length=222, Percent_Identity=28.8288288288288, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI153792144, Length=205, Percent_Identity=28.780487804878, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI150417984, Length=242, Percent_Identity=30.1652892561983, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI25914749, Length=236, Percent_Identity=30.0847457627119, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961250, Length=229, Percent_Identity=28.3842794759825, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27436953, Length=235, Percent_Identity=25.1063829787234, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI171184400, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI105990541, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI27881501, Length=242, Percent_Identity=23.9669421487603, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI30795238, Length=242, Percent_Identity=23.9669421487603, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI47078218, Length=214, Percent_Identity=24.7663551401869, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI45446740, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI48995001, Length=243, Percent_Identity=36.6255144032922, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1790190, Length=252, Percent_Identity=33.7301587301587, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1788472, Length=267, Percent_Identity=31.8352059925094, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789991, Length=257, Percent_Identity=30.3501945525292, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1788210, Length=226, Percent_Identity=32.3008849557522, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788897, Length=238, Percent_Identity=34.8739495798319, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790525, Length=248, Percent_Identity=30.6451612903226, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787792, Length=248, Percent_Identity=30.241935483871, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787712, Length=236, Percent_Identity=30.5084745762712, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=31.6017316017316, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789962, Length=214, Percent_Identity=32.7102803738318, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=30.2521008403361, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787758, Length=216, Percent_Identity=31.0185185185185, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787370, Length=244, Percent_Identity=27.8688524590164, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=28.1512605042017, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693107, Length=280, Percent_Identity=29.2857142857143, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789864, Length=242, Percent_Identity=28.9256198347107, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=26.1802575107296, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=28.1512605042017, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787089, Length=252, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=31.0344827586207, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790467, Length=232, Percent_Identity=28.448275862069, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=31.0043668122271, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787500, Length=215, Percent_Identity=30.2325581395349, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=30.9090909090909, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=28.2157676348548, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=27.4590163934426, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786398, Length=248, Percent_Identity=29.4354838709677, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789032, Length=214, Percent_Identity=28.9719626168224, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082268, Length=207, Percent_Identity=24.6376811594203, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87081782, Length=233, Percent_Identity=26.6094420600858, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=26.9406392694064, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=29.9145299145299, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790534, Length=229, Percent_Identity=27.0742358078603, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789672, Length=212, Percent_Identity=25.4716981132075, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788506, Length=224, Percent_Identity=30.3571428571429, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787547, Length=215, Percent_Identity=27.4418604651163, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082267, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788644, Length=211, Percent_Identity=26.5402843601896, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI48994883, Length=234, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787164, Length=223, Percent_Identity=26.9058295964126, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=23.8532110091743, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788165, Length=248, Percent_Identity=28.6290322580645, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787112, Length=192, Percent_Identity=30.2083333333333, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788450, Length=225, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790739, Length=234, Percent_Identity=26.0683760683761, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=228, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786703, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786981, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787759, Length=221, Percent_Identity=27.6018099547511, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789891, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786253, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789593, Length=240, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788540, Length=205, Percent_Identity=30.7317073170732, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789586, Length=211, Percent_Identity=27.0142180094787, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=28.1407035175879, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786654, Length=202, Percent_Identity=28.7128712871287, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71992290, Length=225, Percent_Identity=32.4444444444444, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17511077, Length=221, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115534520, Length=210, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=234, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=217, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551702, Length=236, Percent_Identity=26.271186440678, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17551700, Length=236, Percent_Identity=26.271186440678, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=30.0469483568075, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=198, Percent_Identity=30.8080808080808, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71988343, Length=254, Percent_Identity=26.3779527559055, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=198, Percent_Identity=29.7979797979798, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=192, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17136592, Length=217, Percent_Identity=30.4147465437788, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221500365, Length=218, Percent_Identity=28.4403669724771, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007184, Length=218, Percent_Identity=28.4403669724771, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=24.7747747747748, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28574533, Length=197, Percent_Identity=26.9035532994924, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24643674, Length=216, Percent_Identity=25, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574744, Length=205, Percent_Identity=27.8048780487805, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=25.5605381165919, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28571209, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136662, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161076682, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161076684, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581617, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581615, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85816269, Length=210, Percent_Identity=28.0952380952381, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24580553, Length=210, Percent_Identity=28.0952380952381, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI85724864, Length=210, Percent_Identity=28.0952380952381, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24580555, Length=210, Percent_Identity=28.0952380952381, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 29194; Mature: 29194

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNTTSPNHSPNASSPLVMQARGLVKRYGQVTALDGTDFELRAGEILAVIGDNGAGKSSLI
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEECCCEEEEECCCCCCHHHHH
KALSGATVPDEGELLLDGKPVRFKSPIDARRAGIETVYQDLAVAPAMSIAENLFLGRELI
HHHHCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTRGLGKLLHLLDKKRMLEQAIARMQELKVGIRSMTQAVETLSGGQRQCVAVARAAAFAQ
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
HVVIMDEPTAALGVKEGNMVLELIRRVRDKGLPVILISHNMPHVFEVADRIHIQRLGRRA
EEEEECCCCHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHH
AVVNPKTISMSDTVAVMTGAKTAEELPQAALA
EECCCCEECCCCCEEEEECCHHHHHHHHHHCC
>Mature Secondary Structure
MNTTSPNHSPNASSPLVMQARGLVKRYGQVTALDGTDFELRAGEILAVIGDNGAGKSSLI
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEECCCEEEEECCCCCCHHHHH
KALSGATVPDEGELLLDGKPVRFKSPIDARRAGIETVYQDLAVAPAMSIAENLFLGRELI
HHHHCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTRGLGKLLHLLDKKRMLEQAIARMQELKVGIRSMTQAVETLSGGQRQCVAVARAAAFAQ
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
HVVIMDEPTAALGVKEGNMVLELIRRVRDKGLPVILISHNMPHVFEVADRIHIQRLGRRA
EEEEECCCCHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHH
AVVNPKTISMSDTVAVMTGAKTAEELPQAALA
EECCCCEECCCCCEEEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]