| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789056
Identifier: 91789056
GI number: 91789056
Start: 3380540
End: 3381595
Strand: Direct
Name: 91789056
Synonym: Bpro_3196
Alternate gene names: NA
Gene position: 3380540-3381595 (Clockwise)
Preceding gene: 91789055
Following gene: 91789058
Centisome position: 65.01
GC content: 60.04
Gene sequence:
>1056_bases ATGAAACTGACCAAAAGCGAACGCATGGAACTTCAACAGCAAGCTGCCGCGAGGAACGCCCGAGCCGATTCGGCGCGCCA CGCCCGATTGATCCTGCTGCTGGCCGATGGGCTCACCTGGGCTGAGATTCGCGCCAAGCTGGACTGCAGCGACAGCTATA TTGATCGCTGGAGCAAACGCTTTGAAAGTGATCGCCTGGCCGGCCTGTTCGCTCGTCATGCCGGGCGCGAGCGCTACAAG GTGACTGATCGCCTGGAGGCGCGTGTGCTGGCGCGAACCACCAAACACAAGCCGGCTGACGGCTCCACGCACTGGTCCTC GCGCAAACTGGCAGCTGAACTGGGCGGCGATATCTCCCACATGACGGTGGCCCGGATCTGGGCCAGGCACGGCATCAAGC CGCATTTGCTGGAAGGCTATCTCACCTCCAACGATCCGGACTTTGAGACCAAGGCTGCCGATGTCATCGGGCTGTACCTG AACCCGCCTCAGAACGCCGTGGTGTTCCGTGTCGATGAAAAGACCGCGATTCAGGCGCTGGATCGGCTGGACCCGGTGCT GCCGCTGTCGCCGGGGCGCGCCGAGCGACACGGCTTTGAGTATTTCCGGCACGGCACGCTCTCCTTGTACGCGGCCTTCA ATACCAAGACCGGTGAGGTGCTGGGCAAGACGGCCACTCGCCATACCTCGGCCGAGTTCGTCGCGTTTCTCACCGATATC GTGGCCAACCAGCCCAAGGGCAAAGAGATTCACGTCATCGCCGACAACCTCTCGGCCCACAAGACCAAGCACGTCGAGCA GTTCCTGGCCACGCACAGCAACGTTCATATGCACTTCACCCCGACGTACTCGTCCTGGCTCAACCAGGTGGAGTTGTGGT TTGCCAAGATCGAGCGCGATGTCATCGCCCGTGGCGTGTTCACGTCTTTGCCTGATCTGAAGCGAAAACTCATGCGCTAC ATCCGCCAGTACAACGAGCAACCCAAACCCGTGAAATGGAAGTACTGTGATTTGTCACGGCGTATCACTCCCGATTCAAT CGTTACAGTCCACTAG
Upstream 100 bases:
>100_bases ACTCTACACAGGGAAAAGTTCACTCTCTTTTCTCCGTTACAGGTCACTAGTGGACTGTAACGTTTAAAACGGAAGTATCA TTGTAGCCATGGAGGTTGCG
Downstream 100 bases:
>100_bases TGCAGCGACTCCGGTTGAATGTCATTCAACAACTGCTAAAAGCCGACCGTCCATCAGCTCGATTGCGCGAGCGCCCAGCC CACATGCTCCCGGACCAGCG
Product: putative transposase
Products: NA
Alternate protein names: ISO-IS200 39 kDa protein [H]
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MKLTKSERMELQQQAAARNARADSARHARLILLLADGLTWAEIRAKLDCSDSYIDRWSKRFESDRLAGLFARHAGRERYK VTDRLEARVLARTTKHKPADGSTHWSSRKLAAELGGDISHMTVARIWARHGIKPHLLEGYLTSNDPDFETKAADVIGLYL NPPQNAVVFRVDEKTAIQALDRLDPVLPLSPGRAERHGFEYFRHGTLSLYAAFNTKTGEVLGKTATRHTSAEFVAFLTDI VANQPKGKEIHVIADNLSAHKTKHVEQFLATHSNVHMHFTPTYSSWLNQVELWFAKIERDVIARGVFTSLPDLKRKLMRY IRQYNEQPKPVKWKYCDLSRRITPDSIVTVH
Sequences:
>Translated_351_residues MKLTKSERMELQQQAAARNARADSARHARLILLLADGLTWAEIRAKLDCSDSYIDRWSKRFESDRLAGLFARHAGRERYK VTDRLEARVLARTTKHKPADGSTHWSSRKLAAELGGDISHMTVARIWARHGIKPHLLEGYLTSNDPDFETKAADVIGLYL NPPQNAVVFRVDEKTAIQALDRLDPVLPLSPGRAERHGFEYFRHGTLSLYAAFNTKTGEVLGKTATRHTSAEFVAFLTDI VANQPKGKEIHVIADNLSAHKTKHVEQFLATHSNVHMHFTPTYSSWLNQVELWFAKIERDVIARGVFTSLPDLKRKLMRY IRQYNEQPKPVKWKYCDLSRRITPDSIVTVH >Mature_351_residues MKLTKSERMELQQQAAARNARADSARHARLILLLADGLTWAEIRAKLDCSDSYIDRWSKRFESDRLAGLFARHAGRERYK VTDRLEARVLARTTKHKPADGSTHWSSRKLAAELGGDISHMTVARIWARHGIKPHLLEGYLTSNDPDFETKAADVIGLYL NPPQNAVVFRVDEKTAIQALDRLDPVLPLSPGRAERHGFEYFRHGTLSLYAAFNTKTGEVLGKTATRHTSAEFVAFLTDI VANQPKGKEIHVIADNLSAHKTKHVEQFLATHSNVHMHFTPTYSSWLNQVELWFAKIERDVIARGVFTSLPDLKRKLMRY IRQYNEQPKPVKWKYCDLSRRITPDSIVTVH
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR001584 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 40054; Mature: 40054
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTKSERMELQQQAAARNARADSARHARLILLLADGLTWAEIRAKLDCSDSYIDRWSKR CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEHHHEECCCCHHHHHHHHHH FESDRLAGLFARHAGRERYKVTDRLEARVLARTTKHKPADGSTHWSSRKLAAELGGDISH HCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHH MTVARIWARHGIKPHLLEGYLTSNDPDFETKAADVIGLYLNPPQNAVVFRVDEKTAIQAL HHHHHHHHHCCCCHHHHCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHH DRLDPVLPLSPGRAERHGFEYFRHGTLSLYAAFNTKTGEVLGKTATRHTSAEFVAFLTDI HHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHH VANQPKGKEIHVIADNLSAHKTKHVEQFLATHSNVHMHFTPTYSSWLNQVELWFAKIERD HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH VIARGVFTSLPDLKRKLMRYIRQYNEQPKPVKWKYCDLSRRITPDSIVTVH HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEC >Mature Secondary Structure MKLTKSERMELQQQAAARNARADSARHARLILLLADGLTWAEIRAKLDCSDSYIDRWSKR CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEHHHEECCCCHHHHHHHHHH FESDRLAGLFARHAGRERYKVTDRLEARVLARTTKHKPADGSTHWSSRKLAAELGGDISH HCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHH MTVARIWARHGIKPHLLEGYLTSNDPDFETKAADVIGLYLNPPQNAVVFRVDEKTAIQAL HHHHHHHHHCCCCHHHHCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHH DRLDPVLPLSPGRAERHGFEYFRHGTLSLYAAFNTKTGEVLGKTATRHTSAEFVAFLTDI HHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHH VANQPKGKEIHVIADNLSAHKTKHVEQFLATHSNVHMHFTPTYSSWLNQVELWFAKIERD HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH VIARGVFTSLPDLKRKLMRYIRQYNEQPKPVKWKYCDLSRRITPDSIVTVH HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2824781 [H]