| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yceI [C]
Identifier: 91789013
GI number: 91789013
Start: 3329989
End: 3330540
Strand: Direct
Name: yceI [C]
Synonym: Bpro_3153
Alternate gene names: 91789013
Gene position: 3329989-3330540 (Clockwise)
Preceding gene: 91789012
Following gene: 91789014
Centisome position: 64.03
GC content: 65.58
Gene sequence:
>552_bases ATGAGATTCCCTGCTGTCGCTGCGGCCCTGCTGCTGTCCTGCGCATGTGTCCAGGCCACCGAATACCGGCGGCTCGACCT GGCGGGCAGCCATATCCGCTTTACCTCGCGGCAAATGGGCGTCCCGGTGGATGGGGCCTTCCGCAAATTCGACGCCAGCC TTGCCTTCGACCCCGAGGCGCCCGCCGCGGCCCGCGGACAGCTGCGCATCGACCTGTCCAGCGTCGACACCGGCCTGCGG GAGGTCAATGAAGAGGTAGTGGGTGCGCAGTGGTTCGATGCCAGCCGCCATCCCGAGGCGCGCTTCGAGATGCGCCAGAT CCAGTCGCAGGGCGCCGGCCGCTTCCAGGTCAGCGGGGTCCTGAGCATCAAGGGCGCCAGTCAGCCCGTGGTGGTCAACG CGGTGCTCAAGACCAGTGGCAAGCAGGCCGTCATGGAAGGCTCTTTTGTGATGAAACGCCTGGATTTCGGCATCGGCGGA GGCACCTGGGGCGATGTTCGCGTGGTGGCCAACGAAGTGATGGTGCAGTTTCACCTGGTCCTTGAACCGTAG
Upstream 100 bases:
>100_bases TGGGTCTGGTAAGCCTGCATGTCGCAGCGGCGCTCAAACACCATTTCATCGACCGGGACGGCTTGCTGGGCCGGATGTTC CGGTTCAAGGGAGCCCGCCC
Downstream 100 bases:
>100_bases CGGCCCACCGTCAGGAGTTACTCATGAAAGAAATGAAAAAACTTGTTGTAGCGCTGCTGGGCAATCTATTCCTGGCTTCG GCGTTCGCCGTCGTCGATGT
Product: YceI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MRFPAVAAALLLSCACVQATEYRRLDLAGSHIRFTSRQMGVPVDGAFRKFDASLAFDPEAPAAARGQLRIDLSSVDTGLR EVNEEVVGAQWFDASRHPEARFEMRQIQSQGAGRFQVSGVLSIKGASQPVVVNAVLKTSGKQAVMEGSFVMKRLDFGIGG GTWGDVRVVANEVMVQFHLVLEP
Sequences:
>Translated_183_residues MRFPAVAAALLLSCACVQATEYRRLDLAGSHIRFTSRQMGVPVDGAFRKFDASLAFDPEAPAAARGQLRIDLSSVDTGLR EVNEEVVGAQWFDASRHPEARFEMRQIQSQGAGRFQVSGVLSIKGASQPVVVNAVLKTSGKQAVMEGSFVMKRLDFGIGG GTWGDVRVVANEVMVQFHLVLEP >Mature_183_residues MRFPAVAAALLLSCACVQATEYRRLDLAGSHIRFTSRQMGVPVDGAFRKFDASLAFDPEAPAAARGQLRIDLSSVDTGLR EVNEEVVGAQWFDASRHPEARFEMRQIQSQGAGRFQVSGVLSIKGASQPVVVNAVLKTSGKQAVMEGSFVMKRLDFGIGG GTWGDVRVVANEVMVQFHLVLEP
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=160, Percent_Identity=28.125, Blast_Score=73, Evalue=1e-14,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 19822; Mature: 19822
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFPAVAAALLLSCACVQATEYRRLDLAGSHIRFTSRQMGVPVDGAFRKFDASLAFDPEA CCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECHHCCCCCCCHHHHHCCCEEECCCC PAAARGQLRIDLSSVDTGLREVNEEVVGAQWFDASRHPEARFEMRQIQSQGAGRFQVSGV CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEE LSIKGASQPVVVNAVLKTSGKQAVMEGSFVMKRLDFGIGGGTWGDVRVVANEVMVQFHLV EEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEEEEE LEP ECC >Mature Secondary Structure MRFPAVAAALLLSCACVQATEYRRLDLAGSHIRFTSRQMGVPVDGAFRKFDASLAFDPEA CCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECHHCCCCCCCHHHHHCCCEEECCCC PAAARGQLRIDLSSVDTGLREVNEEVVGAQWFDASRHPEARFEMRQIQSQGAGRFQVSGV CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEE LSIKGASQPVVVNAVLKTSGKQAVMEGSFVMKRLDFGIGGGTWGDVRVVANEVMVQFHLV EEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEEEEE LEP ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA