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The map label for this gene is qseD [H]

Identifier: 91788959

GI number: 91788959

Start: 3271206

End: 3272108

Strand: Direct

Name: qseD [H]

Synonym: Bpro_3099

Alternate gene names: 91788959

Gene position: 3271206-3272108 (Clockwise)

Preceding gene: 91788957

Following gene: 91788970

Centisome position: 62.9

GC content: 60.02

Gene sequence:

>903_bases
ATGTTGAACTTTGTCTGGCTCGATGACTTCCGCACCCTGGCGGCCACAGGCAACTTCTCGAGGGCTGCTGAAGAAAGGCA
CATGACGCAGCCAGCATTCAGCCGCCGCATTCGTGCCCTTGAGGAATGGCTGGGGGCCGATCTATTCGACCGGACTACAC
AGCCAGCGAAACTCACCGAAGTTGGCGAGTGGTTTCGCGGCGTGGCAGACGAACTTATCGTGAGGGTTGCGCGCGTGCCG
GGCGAGGCGCGTATCGTGGCCGAGGCAAGCTCGGTGACGCTTCGAATTGCGGCCACCCACGCGCTTTCGTTCACCTTTTT
GCCGCGATGGCTGCGCAGCCTAGAATCGAGAATCACACTCGGCCCGGTGCAACTCGTCTCAGACGTATTGCAGCGATGTG
AAGCCTTGATGCTTCAGAGCAAGGTCCAATTCGTCCTGAGTCATGCGCACCCTCAAGCGCAGGGCGCTCTGGACGTCGAC
ACCTACCTGTCTGTCCAGATCGGCAAGGACACGTTGATTCCCGTGTCATCGCCCAACGACAAGGGCAAGCCGCTTCATCA
CCTTGCGCCTCAGTCTGGTTCGATTGTTCCTGTGCTTCAGTACACGACGGAGTCTGGCTTGGGACGCATTGTTCGCGCAG
TCGTCGGTCGGCAGCTCGAATCCGTCCCCATACGGGTCGCTTTCACGGCGCACCTTGCGTCCGTATTGAGGACAATGGCC
CTGGACGGGCGAGGAATTGCCTGGCTGCCGGAGACCCTGGTCGAAGAGGACATCACAGCGGGCCGACTCATTGCAGCAGC
CGGAGACGATTGGAACATTCCGCTGGAGATTCGGCTTTATCGCGATCAGAGCCCGGCAGCAAGCGCTGCTGAAGCATTCT
GGAGCACAGCCGCGGGTCGATAA

Upstream 100 bases:

>100_bases
CGGGTGACTCCTGAGTTTTTGAGAGGAGCCTCAATGGTCGGCGCTATCGACTTTTTCCGCCAATGCTCTTGTTCTCTGCT
TCAATGCTTTGAAAGCACCG

Downstream 100 bases:

>100_bases
AGGTCCGCACGGCGCCGGGGTGCCAACGCCTTGAGGTATGCGCTACGGCACCCATGGCGCAATGTTGCAACGTTGCAACG
TTGATTTGGCTGGGCTGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLNFVWLDDFRTLAATGNFSRAAEERHMTQPAFSRRIRALEEWLGADLFDRTTQPAKLTEVGEWFRGVADELIVRVARVP
GEARIVAEASSVTLRIAATHALSFTFLPRWLRSLESRITLGPVQLVSDVLQRCEALMLQSKVQFVLSHAHPQAQGALDVD
TYLSVQIGKDTLIPVSSPNDKGKPLHHLAPQSGSIVPVLQYTTESGLGRIVRAVVGRQLESVPIRVAFTAHLASVLRTMA
LDGRGIAWLPETLVEEDITAGRLIAAAGDDWNIPLEIRLYRDQSPAASAAEAFWSTAAGR

Sequences:

>Translated_300_residues
MLNFVWLDDFRTLAATGNFSRAAEERHMTQPAFSRRIRALEEWLGADLFDRTTQPAKLTEVGEWFRGVADELIVRVARVP
GEARIVAEASSVTLRIAATHALSFTFLPRWLRSLESRITLGPVQLVSDVLQRCEALMLQSKVQFVLSHAHPQAQGALDVD
TYLSVQIGKDTLIPVSSPNDKGKPLHHLAPQSGSIVPVLQYTTESGLGRIVRAVVGRQLESVPIRVAFTAHLASVLRTMA
LDGRGIAWLPETLVEEDITAGRLIAAAGDDWNIPLEIRLYRDQSPAASAAEAFWSTAAGR
>Mature_300_residues
MLNFVWLDDFRTLAATGNFSRAAEERHMTQPAFSRRIRALEEWLGADLFDRTTQPAKLTEVGEWFRGVADELIVRVARVP
GEARIVAEASSVTLRIAATHALSFTFLPRWLRSLESRITLGPVQLVSDVLQRCEALMLQSKVQFVLSHAHPQAQGALDVD
TYLSVQIGKDTLIPVSSPNDKGKPLHHLAPQSGSIVPVLQYTTESGLGRIVRAVVGRQLESVPIRVAFTAHLASVLRTMA
LDGRGIAWLPETLVEEDITAGRLIAAAGDDWNIPLEIRLYRDQSPAASAAEAFWSTAAGR

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=290, Percent_Identity=32.0689655172414, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI157672245, Length=136, Percent_Identity=30.1470588235294, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32963; Mature: 32963

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFVWLDDFRTLAATGNFSRAAEERHMTQPAFSRRIRALEEWLGADLFDRTTQPAKLTE
CCEEEEECCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH
VGEWFRGVADELIVRVARVPGEARIVAEASSVTLRIAATHALSFTFLPRWLRSLESRITL
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCC
GPVQLVSDVLQRCEALMLQSKVQFVLSHAHPQAQGALDVDTYLSVQIGKDTLIPVSSPND
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCC
KGKPLHHLAPQSGSIVPVLQYTTESGLGRIVRAVVGRQLESVPIRVAFTAHLASVLRTMA
CCCCHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHHCCCEEEEHHHHHHHHHHHHH
LDGRGIAWLPETLVEEDITAGRLIAAAGDDWNIPLEIRLYRDQSPAASAAEAFWSTAAGR
CCCCCCEECCHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNFVWLDDFRTLAATGNFSRAAEERHMTQPAFSRRIRALEEWLGADLFDRTTQPAKLTE
CCEEEEECCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHHHH
VGEWFRGVADELIVRVARVPGEARIVAEASSVTLRIAATHALSFTFLPRWLRSLESRITL
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCC
GPVQLVSDVLQRCEALMLQSKVQFVLSHAHPQAQGALDVDTYLSVQIGKDTLIPVSSPND
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCC
KGKPLHHLAPQSGSIVPVLQYTTESGLGRIVRAVVGRQLESVPIRVAFTAHLASVLRTMA
CCCCHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCHHHCCCEEEEHHHHHHHHHHHHH
LDGRGIAWLPETLVEEDITAGRLIAAAGDDWNIPLEIRLYRDQSPAASAAEAFWSTAAGR
CCCCCCEECCHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]