Click here to switch to the map view.

The map label for this gene is ybiX [C]

Identifier: 91788908

GI number: 91788908

Start: 3215577

End: 3216260

Strand: Direct

Name: ybiX [C]

Synonym: Bpro_3048

Alternate gene names: 91788908

Gene position: 3215577-3216260 (Clockwise)

Preceding gene: 91788907

Following gene: 91788909

Centisome position: 61.83

GC content: 62.87

Gene sequence:

>684_bases
ATGCTGCTCACTCTTCCCGACATCCTCAGCCCGCAGGACCTGCAGGCAGCTCGTCAACTGCTCATCGACGCCCCCTGGGC
CGACGGCAGGGACAGCGCTGGCGCCCAGGCACGGCAGGTCAAGAATAATGCCCAGCTACCGCACGATTGCGAAGCGGCAC
GAGCCATTGGCACCATGGTCGTCGGTGGACTGGAACGCAGCGCGTTATTCCTCACGGCTGCACTGCCCAAAAAAATCTTC
ACGCCCCGCATTAACCGCTACAGCGGGGCGGCCAATCACTACGGTAACCACGTTGACAGCGCCATACGCACCATGGCGGG
CAGCGGACAGCGCGTGCGCACCGATGTTTCCTGCACCGTCTTCCTGTCAGAGCCCGATGACTATGAAGGCGGCGAACTCA
CCATTGCCGATACCTACGGCGAGCAGCGCATCAAACTGCCCGCCGGCCATGCTGTTTTGTACCCGGGCACCAGCCTGCAT
CAAGTGCAGCCCGTAACACGCGGCCAGCGTCTGGCCTGCTTCTTCTGGGTAGAAAGTCTGGTGCGCGGCAACGAACAACG
CCGCCTGCTGTTTGACATGGACATGGCCCTGATGCAGCTTCGCCAGGAGCACGGCGAGAGCCAGGCCACCGTCGCGCTCA
CAGGCGCCTACCACAACCTGCTCCGCATGTGGGCCGACACATGA

Upstream 100 bases:

>100_bases
GACTGGCACCGTGAAGTTCTGATTCTTCAGAGCTTTCAGTTTCTTCAAGGCTTTTGCCACCTCACTCCGGGGTGGCTTTT
TTACTTGCATAACCACCCCC

Downstream 100 bases:

>100_bases
GCGCAGTCAAAACAATCGCCGTACCTGCCGTCGAGCCCTTGCCGTCCGGTCTGGTCACACTGGCCGACCATGAGGCTCAA
GCACGCGAGCGGCTGGATGA

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLLTLPDILSPQDLQAARQLLIDAPWADGRDSAGAQARQVKNNAQLPHDCEAARAIGTMVVGGLERSALFLTAALPKKIF
TPRINRYSGAANHYGNHVDSAIRTMAGSGQRVRTDVSCTVFLSEPDDYEGGELTIADTYGEQRIKLPAGHAVLYPGTSLH
QVQPVTRGQRLACFFWVESLVRGNEQRRLLFDMDMALMQLRQEHGESQATVALTGAYHNLLRMWADT

Sequences:

>Translated_227_residues
MLLTLPDILSPQDLQAARQLLIDAPWADGRDSAGAQARQVKNNAQLPHDCEAARAIGTMVVGGLERSALFLTAALPKKIF
TPRINRYSGAANHYGNHVDSAIRTMAGSGQRVRTDVSCTVFLSEPDDYEGGELTIADTYGEQRIKLPAGHAVLYPGTSLH
QVQPVTRGQRLACFFWVESLVRGNEQRRLLFDMDMALMQLRQEHGESQATVALTGAYHNLLRMWADT
>Mature_227_residues
MLLTLPDILSPQDLQAARQLLIDAPWADGRDSAGAQARQVKNNAQLPHDCEAARAIGTMVVGGLERSALFLTAALPKKIF
TPRINRYSGAANHYGNHVDSAIRTMAGSGQRVRTDVSCTVFLSEPDDYEGGELTIADTYGEQRIKLPAGHAVLYPGTSLH
QVQPVTRGQRLACFFWVESLVRGNEQRRLLFDMDMALMQLRQEHGESQATVALTGAYHNLLRMWADT

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=226, Percent_Identity=45.575221238938, Blast_Score=216, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3048_POLSJ (Q128T0)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_549860.1
- ProteinModelPortal:   Q128T0
- SMR:   Q128T0
- STRING:   Q128T0
- GeneID:   4014278
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_3048
- NMPDR:   fig|296591.1.peg.2079
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- PhylomeDB:   Q128T0
- ProtClustDB:   PRK05467
- BioCyc:   PSP296591:BPRO_3048-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25001; Mature: 25001

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 170-170

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTLPDILSPQDLQAARQLLIDAPWADGRDSAGAQARQVKNNAQLPHDCEAARAIGTMV
CEEECCCCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
VGGLERSALFLTAALPKKIFTPRINRYSGAANHYGNHVDSAIRTMAGSGQRVRTDVSCTV
HCCCCHHHEEEEHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEECEEEEE
FLSEPDDYEGGELTIADTYGEQRIKLPAGHAVLYPGTSLHQVQPVTRGQRLACFFWVESL
EEECCCCCCCCEEEEEECCCCCEEECCCCCEEECCCCCCCEECCCCCCCEEHHHHHHHHH
VRGNEQRRLLFDMDMALMQLRQEHGESQATVALTGAYHNLLRMWADT
HCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MLLTLPDILSPQDLQAARQLLIDAPWADGRDSAGAQARQVKNNAQLPHDCEAARAIGTMV
CEEECCCCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
VGGLERSALFLTAALPKKIFTPRINRYSGAANHYGNHVDSAIRTMAGSGQRVRTDVSCTV
HCCCCHHHEEEEHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEECEEEEE
FLSEPDDYEGGELTIADTYGEQRIKLPAGHAVLYPGTSLHQVQPVTRGQRLACFFWVESL
EEECCCCCCCCEEEEEECCCCCEEECCCCCEEECCCCCCCEECCCCCCCEEHHHHHHHHH
VRGNEQRRLLFDMDMALMQLRQEHGESQATVALTGAYHNLLRMWADT
HCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA