| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788862
Identifier: 91788862
GI number: 91788862
Start: 3163099
End: 3164034
Strand: Direct
Name: 91788862
Synonym: Bpro_3002
Alternate gene names: NA
Gene position: 3163099-3164034 (Clockwise)
Preceding gene: 91788853
Following gene: 91788863
Centisome position: 60.83
GC content: 60.79
Gene sequence:
>936_bases ATGGCTTCACGCGTTCTATGGAAAGGTGCCATCAGCTTTGGGCTGGTCCACATCCCGGTGGCGCTGCATGCGGCCACGTC TGACAGCGGTATCGATTTTGACTGGCTGGACAAACGCAGCATGGACCCGGTTGGCTACAAACGCATCAACAAAAAGACCG GCAAGGAAATCAGCCGGGAAAACATCGTCAAGGGCATCAAATACCAGGATGACCAGTATGTGGTCCTGTCCGCAGAGGAA ATTGCCGGGGCTTATCCCAGGACGACCCAGACGATCGAGATCGAAAATTTCGTTTCCAATACGGAAATTCCCTTCATCTA CCTGGAGCGGCCCTACTACATCGCGCCCATCAACAAAGGGCAAAAAGTCTATGCCCTGCTGCGCGACACCTTGCTTGACA CGCAGCGGGTCGGCATCGCGCGGGTGGTGATCCAGACCAAGCAACACCTGGCCGTGCTGGTGCCCTCCGGCCCTGGCCTC ATCCTGAACCTGATGCGCTGGGGCGAAGAAATCCGCTCCTGGGAAGACCTGGACCTTCCACCCGAGGGCGCGAAGGCGGC CGGGCTGTCGGCGCGCGAACTGTCCATGGCCAAACAGCTCGTCAATGACATGACGGAGACCTGGCATCCGGAAAAATTCA AGGACTCGTTCAGGGACGAAATCATGGCGCTGGTCGAACGCAAGGCCAGGGAAGGCAAGATCGAAACCGTGGAACAGCCT GAAGCGGCGGAGGATTCCGCCGCACGTTCGGGCGCCACCATCCTCGACCTCACCGAATTGCTCCAGCGCAGCCTGCGCAA GGGCGGCGCGGCGGCCGCAGCAGATGACAAGGCGCCCGCCAAGTCCGACACCAGAGCCCGGACGGCCACCCGCACGACCC CCCGCAAAAATACGGTAAAAGCCGCTTCGCGCACGCACGCCAAGCGGGCCGCCTGA
Upstream 100 bases:
>100_bases CAACACCATCTGCGTCTGCGCGGTTTGCGGGAAAGCATTCACGGCACCGCCGCCGACAGGGGCGGCTGACGCAGTACGGT ACGACCGGAAGGAGCTGGCA
Downstream 100 bases:
>100_bases GGCTTGCCGCCAACACATCCGAACCATGGGTTCCGCGGATTTGCTGAAAACCTACCGCGCCAGGCGCGACTTCAAGCAGA CGCCCGAGCCCGCCACGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MASRVLWKGAISFGLVHIPVALHAATSDSGIDFDWLDKRSMDPVGYKRINKKTGKEISRENIVKGIKYQDDQYVVLSAEE IAGAYPRTTQTIEIENFVSNTEIPFIYLERPYYIAPINKGQKVYALLRDTLLDTQRVGIARVVIQTKQHLAVLVPSGPGL ILNLMRWGEEIRSWEDLDLPPEGAKAAGLSARELSMAKQLVNDMTETWHPEKFKDSFRDEIMALVERKAREGKIETVEQP EAAEDSAARSGATILDLTELLQRSLRKGGAAAAADDKAPAKSDTRARTATRTTPRKNTVKAASRTHAKRAA
Sequences:
>Translated_311_residues MASRVLWKGAISFGLVHIPVALHAATSDSGIDFDWLDKRSMDPVGYKRINKKTGKEISRENIVKGIKYQDDQYVVLSAEE IAGAYPRTTQTIEIENFVSNTEIPFIYLERPYYIAPINKGQKVYALLRDTLLDTQRVGIARVVIQTKQHLAVLVPSGPGL ILNLMRWGEEIRSWEDLDLPPEGAKAAGLSARELSMAKQLVNDMTETWHPEKFKDSFRDEIMALVERKAREGKIETVEQP EAAEDSAARSGATILDLTELLQRSLRKGGAAAAADDKAPAKSDTRARTATRTTPRKNTVKAASRTHAKRAA >Mature_310_residues ASRVLWKGAISFGLVHIPVALHAATSDSGIDFDWLDKRSMDPVGYKRINKKTGKEISRENIVKGIKYQDDQYVVLSAEEI AGAYPRTTQTIEIENFVSNTEIPFIYLERPYYIAPINKGQKVYALLRDTLLDTQRVGIARVVIQTKQHLAVLVPSGPGLI LNLMRWGEEIRSWEDLDLPPEGAKAAGLSARELSMAKQLVNDMTETWHPEKFKDSFRDEIMALVERKAREGKIETVEQPE AAEDSAARSGATILDLTELLQRSLRKGGAAAAADDKAPAKSDTRARTATRTTPRKNTVKAASRTHAKRAA
Specific function: Could be involved in DNA repair [H]
COG id: COG1273
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Ku domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006164 - InterPro: IPR009187 - InterPro: IPR016194 [H]
Pfam domain/function: PF02735 Ku [H]
EC number: NA
Molecular weight: Translated: 34539; Mature: 34408
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRVLWKGAISFGLVHIPVALHAATSDSGIDFDWLDKRSMDPVGYKRINKKTGKEISRE CCCCHHHHHHHHHHHEEECCEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHH NIVKGIKYQDDQYVVLSAEEIAGAYPRTTQTIEIENFVSNTEIPFIYLERPYYIAPINKG HHHHCCCCCCCCEEEEEHHHHCCCCCCCCEEEEHHHHHCCCCCCEEEEECCEEEEECCCC QKVYALLRDTLLDTQRVGIARVVIQTKQHLAVLVPSGPGLILNLMRWGEEIRSWEDLDLP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC PEGAKAAGLSARELSMAKQLVNDMTETWHPEKFKDSFRDEIMALVERKAREGKIETVEQP CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC EAAEDSAARSGATILDLTELLQRSLRKGGAAAAADDKAPAKSDTRARTATRTTPRKNTVK CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH AASRTHAKRAA HHHHHHHHCCC >Mature Secondary Structure ASRVLWKGAISFGLVHIPVALHAATSDSGIDFDWLDKRSMDPVGYKRINKKTGKEISRE CCCHHHHHHHHHHHEEECCEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHH NIVKGIKYQDDQYVVLSAEEIAGAYPRTTQTIEIENFVSNTEIPFIYLERPYYIAPINKG HHHHCCCCCCCCEEEEEHHHHCCCCCCCCEEEEHHHHHCCCCCCEEEEECCEEEEECCCC QKVYALLRDTLLDTQRVGIARVVIQTKQHLAVLVPSGPGLILNLMRWGEEIRSWEDLDLP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC PEGAKAAGLSARELSMAKQLVNDMTETWHPEKFKDSFRDEIMALVERKAREGKIETVEQP CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC EAAEDSAARSGATILDLTELLQRSLRKGGAAAAADDKAPAKSDTRARTATRTTPRKNTVK CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH AASRTHAKRAA HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12928499 [H]