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The map label for this gene is ligD

Identifier: 91788863

GI number: 91788863

Start: 3164060

End: 3166708

Strand: Direct

Name: ligD

Synonym: Bpro_3003

Alternate gene names: NA

Gene position: 3164060-3166708 (Clockwise)

Preceding gene: 91788862

Following gene: 91788864

Centisome position: 60.84

GC content: 65.5

Gene sequence:

>2649_bases
ATGGGTTCCGCGGATTTGCTGAAAACCTACCGCGCCAGGCGCGACTTCAAGCAGACGCCCGAGCCCGCCACGGGAGGCGA
GCGCTCCGGCAAGGCGTTGAGGTTTGTGGTCCAGAAGCATGCGGCGCGCAGCCTGCACTACGACTTCCGGCTGGAACTGC
AGGGCACGCTGAAAAGCTGGGCGGTTCCCAAGGGGCCGAGCCTGGATCCGGCCGTCAAACGCATGGCCGTGCATGTCGAA
GACCACCCGATGGCCTATGCAGGCTTTGAAGGCACCATTCCACCCGGGCAGTACGGTGCCGGCCACGTCATTGTGTGGGA
CCGCGGGCTCTGGACGCCGGTGGGCAACCCGGCCGCAGGCCTGAAGAACGGCAAGCTCAAATTTGAACTGCATGGTGAAA
AGCTCAAGGGAGGCTGGACGCTGGTGCGCATGCACGGCCATGCCGGGGAAAGCCATGAACCCTGGCTGCTGATCAAGGAG
CAGGACGACCACGCACGCCCCGAGCAGGTATTTGATGTACTCCAGGCGCTGCCCAACAGCGTGCTTTCCGGCAAGCCCTT
GCCTGGCAAGGCAGCCACCGGCACACAGTGCGCCCCTCGCGCTGCGCGCACCAGAAAAGCAGCGCCTGAAAGCCACGCCG
GGAAGCACGCCAGAACAACGGCGGCCAGCGCACGGTCCGGTAAAAGCATTCCCAAAGGCATTCCCGAAGGCGCGGTGAAA
TCCAGGCTGCCCGGCACGCTGGCCCCGGAACTGGCCACGCTGGTCAACCGCGTGCCTGCCGACCCGCAAGACTGGATCTA
CGAAATCAAGTTTGATGGCTACCGGCTGCTCACCCGCACCGAGGGAGACTCGGTGCGCTGCATCACGCGCAACGGCAACG
ACTGGACCGCCAGGCTGCCTGGGCTGGCCAAAGCCGTTGCACAACTGGATATACGCTCCGCCTGGCTGGACGGCGAAATC
GTGGTGATGAATGACCAGGGCGTGCCCAGCTTCGGCGCGCTGCAAAACGCCTTTGACAGCGCCAGCACGGCCGACATCCG
CTACTACGTGTTCGACCTGCCGTTTTACGATGGGCTGGACCTGCGCCAGGTGCCGCTGGCGCAGCGGCGTGAAATCCTGC
GCACGGCCCTGACGCGCAATCCGCAGGACAGCATCCGTTTCAGCGAGGCGTTTGACCAGCCCCCGCAAGACCTGATCGAC
TCGGCCCAGCGCCTGGGCCTGGAAGGCGTGATCGGCAAGCGCGCAGCCTCGCCCTACGTCTCGCGCCGCTCGCCCGACTG
GATCAAGCTCAAAACCCGGCTGCGCCAGGAGTTTGTGATTGGCGGCTACACCGAGCCCAAAGGCTCCCGCACCGGCCTGG
GAGCCCTGCTGCTGGGTGTGCATGATGCGCAGGGCAGGCTCCGGTACGCCGGCAACGTGGGCACAGGCTTCAATGCCGAG
ACACTGCGCAGCCTCAAGGAGCGGCTGTCAACGCTGCACAGCGAGCGCAGCCCGTTTGCCGCGCTGCCGACAGGCGTCAA
AGGGCAATGGGTGAAGCCGCAACTGCTGGCCGAAGTGGCGTTTGGCGAATGGACCCACGGCGGCCACATTCGACACCCCG
TGTTCCAGGGACTTCGCACCGACAAACCGGCCAGAAACATCCTCCGTGAGACGCCCACATCACCAGTCACCCCCCGGAAA
GGCTCCGACATGCCGCAAGACGCTGCCACACCAGGCCCCACCAGCCGCAAAACCCGTGACAAGGCCCCTGGCAAGGCTCC
TGAGTCCGTGCGCATCACGCATCCCGACCGCGTGATTGACAAGACCACCGGCTTCACCAAGCAAGCCATGGTGGAGCACT
ACGCCGCCGTCGCCCCGCTCATGCTGCCGCACCTCAAGGGGCGCCCGGTTGCCCTGGTCCGCGCGCCGGCAGGCGTCGGG
GGTGAGCTGTTTTTCCAGAAACACGCGCAAGCCACGGCGATTCCCGGCATCAAGCTGCTCGACCCGGCGCTGGACCCGGG
ACATGAGCCGCTGCTCGAGATCCCTTCTGCAGCGGCCCTGCTGGAAGCCGCGCAAGTCAATGTCGTGGAATTCCACACCT
GGAACGCGACCAGCCGCGCCATTCGCAAGCCTGACCGCATGACCTTCGACCTGGACCCCGGCGAAAAGGTTGGCTGGCCG
GAGATGCAGGAGGCCGCGCAGCTGGTGCACTCTCTTCTGGATGAGCTGGGACTGGCCAGTTTTCTGAAAACCAGCGGAGG
CAAGGGCCTGCACGTCGTGGTGCCGCTGAGGCGCAGCCACGACTTCGACACGGTGAAGGATTTCTCGCACGCCATTGTGA
AGCACTTGGCAGGTGTCTTGCCGCAACGCTTCGTGGCGAAGAGCGGCCCCAAAAACCGGGTCGGCAGGATATTTGTGGAC
TACCTGCGCAACGGTTTCGGCGCCACGACCGTCTCGGCCTGGTCGGCGCGCGCGCGGCCAGGGCTGGGGGTCTCGGTACC
GGTGGCGTGGGATGAACTGGCTTCCCTGACCGGAGGTGCGCACTGGACCGCGACGACGATAGGCGGGCGGCTGGCGACTG
GAAACCAGCCCTGGAAGGACTATGGCGCCCGCGCCAATGGCCTGGCGGAGGCGATGAAAAAGCTGGGCTTCAAGCCGCCC
GCCCATTGA

Upstream 100 bases:

>100_bases
ACGGCCACCCGCACGACCCCCCGCAAAAATACGGTAAAAGCCGCTTCGCGCACGCACGCCAAGCGGGCCGCCTGAGGCTT
GCCGCCAACACATCCGAACC

Downstream 100 bases:

>100_bases
CGGCGGAGCGGCCACGAAGCAGCTTGTCATCGGCCTCCTACACCCGCAGCATCCTTGACCCGACAGCCACCGGGAGCCGC
AGCGTCTAGTGTGGTGTTGC

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 882; Mature: 881

Protein sequence:

>882_residues
MGSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSWAVPKGPSLDPAVKRMAVHVE
DHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAGLKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKE
QDDHARPEQVFDVLQALPNSVLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVK
SRLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLPGLAKAVAQLDIRSAWLDGEI
VVMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLDLRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLID
SAQRLGLEGVIGKRAASPYVSRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAE
TLRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRTDKPARNILRETPTSPVTPRK
GSDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVIDKTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVG
GELFFQKHAQATAIPGIKLLDPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWP
EMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVLPQRFVAKSGPKNRVGRIFVD
YLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGAHWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPP
AH

Sequences:

>Translated_882_residues
MGSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSWAVPKGPSLDPAVKRMAVHVE
DHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAGLKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKE
QDDHARPEQVFDVLQALPNSVLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVK
SRLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLPGLAKAVAQLDIRSAWLDGEI
VVMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLDLRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLID
SAQRLGLEGVIGKRAASPYVSRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAE
TLRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRTDKPARNILRETPTSPVTPRK
GSDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVIDKTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVG
GELFFQKHAQATAIPGIKLLDPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWP
EMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVLPQRFVAKSGPKNRVGRIFVD
YLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGAHWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPP
AH
>Mature_881_residues
GSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSWAVPKGPSLDPAVKRMAVHVED
HPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAGLKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKEQ
DDHARPEQVFDVLQALPNSVLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVKS
RLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLPGLAKAVAQLDIRSAWLDGEIV
VMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLDLRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLIDS
AQRLGLEGVIGKRAASPYVSRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAET
LRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRTDKPARNILRETPTSPVTPRKG
SDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVIDKTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVGG
ELFFQKHAQATAIPGIKLLDPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWPE
MQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVLPQRFVAKSGPKNRVGRIFVDY
LRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGAHWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPPA
H

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6324578, Length=249, Percent_Identity=28.5140562248996, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24762424, Length=324, Percent_Identity=27.1604938271605, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 95932; Mature: 95800

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSW
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECHHHC
AVPKGPSLDPAVKRMAVHVEDHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAG
CCCCCCCCCHHHHHHEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
LKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKEQDDHARPEQVFDVLQALPNS
CCCCEEEEEECCCEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVK
HHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHH
SRLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLP
HCCCCCCHHHHHHHHHHCCCCHHHCEEEEEECCEEEEEECCCCCEEEEEECCCCEEEECC
GLAKAVAQLDIRSAWLDGEIVVMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLD
HHHHHHHHHHHHHEECCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
LRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLIDSAQRLGLEGVIGKRAASPYV
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCHH
SRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAE
HCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHH
TLRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRT
HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCC
DKPARNILRETPTSPVTPRKGSDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVID
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHH
KTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVGGELFFQKHAQATAIPGIKLL
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCHHCCCCCCEE
DPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWP
CCCCCCCCCHHHHCCCHHHHHHHHHCEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCH
EMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
PQRFVAKSGPKNRVGRIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGA
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEECCCCHHHHHHHCCCC
HWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPPAH
CEEEEECCCEECCCCCCHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSW
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECHHHC
AVPKGPSLDPAVKRMAVHVEDHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAG
CCCCCCCCCHHHHHHEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
LKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKEQDDHARPEQVFDVLQALPNS
CCCCEEEEEECCCEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVK
HHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHH
SRLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLP
HCCCCCCHHHHHHHHHHCCCCHHHCEEEEEECCEEEEEECCCCCEEEEEECCCCEEEECC
GLAKAVAQLDIRSAWLDGEIVVMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLD
HHHHHHHHHHHHHEECCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
LRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLIDSAQRLGLEGVIGKRAASPYV
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCHH
SRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAE
HCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHH
TLRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRT
HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCC
DKPARNILRETPTSPVTPRKGSDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVID
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHH
KTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVGGELFFQKHAQATAIPGIKLL
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCHHCCCCCCEE
DPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWP
CCCCCCCCCHHHHCCCHHHHHHHHHCEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCH
EMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
PQRFVAKSGPKNRVGRIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGA
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEECCCCHHHHHHHCCCC
HWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPPAH
CEEEEECCCEECCCCCCHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]