| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is braD [H]
Identifier: 91788846
GI number: 91788846
Start: 3141489
End: 3142352
Strand: Direct
Name: braD [H]
Synonym: Bpro_2986
Alternate gene names: 91788846
Gene position: 3141489-3142352 (Clockwise)
Preceding gene: 91788845
Following gene: 91788847
Centisome position: 60.41
GC content: 63.66
Gene sequence:
>864_bases ATGGACATAGCCAACTTCCTCATCCAGCTGCTCAACAGCGTGCAGTACGGCCTCTTGCTGTTCATGCTGGCGGCCGGCCT GACCCTGATCTTCGGCATCATGGGCGTGGTCAACCTGGCGCACGGCAGCTTTTACATGCTCGGCGCCTACCTCGCCTGGT CGCTCAGCGCCCAGCTCGGCAGCCTGACGCTGGCCATCGTGGTGGGCGCCGTGCTCTCGGTCGTGTTCGGCCTGGCCCTC GAATGGCTGCTGTTTCGCCATTTCTATAAACGCGACCACCTCGACCAGGTGCTGCTGACCTTCGGGCTGATCTACATCTT TGAAGAGCTGCGCTCCATCCTGTGGGGCGACGACGTGCACGGCGTGACCATTCCCGACCTCCTCGGCGCCTCCATCCCGC TGACCGAGAACCTGTCCTACCCGGTGTATCGCCTGTTCATGTCCGGTGTCTGCATCGCGCTGGCGCTGGGCCTGTATGGG CTGATCTCCAGGACCCGCCTGGGCATGAAGATACGCGCCGGCGCCTTCAACCGCGAGATGGCCGAATCGCTGGGCATCAA CATCAAGCGCATCCATGCCGTGGTGTTTGCCCTGGGCGTCGGCCTGGCGGCCGTCGCCGGCATGATCGCCGCACCGATCG CCAGCGTCTACCCCAACATGGGCTCGCAGGTGCTCATCATGTGTTTTGTCGTCGTCGTGATCGGCGGCATCGGCTCGGTG CGCGGCGCGCTGATCGCCGCGCTGCTGGTCGGGCTGGTCGATACCTTTGGCAAGGTCTTGCTGCCCTCGGTCGCCGGCAT GCTGGTCTACATGCTGATGGCCGGCGTTCTGCTGTGGAAACCTGAAGGGCTGTTCAAGCAATGA
Upstream 100 bases:
>100_bases CAGCCGCGCCGTACGATGGTTCAACCGCGGTTCGGGCAGTCTTTTCACGCTCATGGGCAGTCTGTTATTGCTGACACGCC GGCATACCTGAGACCGATTT
Downstream 100 bases:
>100_bases GCGCACAAAAATCCAACCTCGAAGTCCTGCCGCGCGGCGTGCAGGTGGCGCTCGTGCTGGGGCTGGTCGCCCTGCTCGCC TTCCCCTTCGCCGGCACCGA
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MDIANFLIQLLNSVQYGLLLFMLAAGLTLIFGIMGVVNLAHGSFYMLGAYLAWSLSAQLGSLTLAIVVGAVLSVVFGLAL EWLLFRHFYKRDHLDQVLLTFGLIYIFEELRSILWGDDVHGVTIPDLLGASIPLTENLSYPVYRLFMSGVCIALALGLYG LISRTRLGMKIRAGAFNREMAESLGINIKRIHAVVFALGVGLAAVAGMIAAPIASVYPNMGSQVLIMCFVVVVIGGIGSV RGALIAALLVGLVDTFGKVLLPSVAGMLVYMLMAGVLLWKPEGLFKQ
Sequences:
>Translated_287_residues MDIANFLIQLLNSVQYGLLLFMLAAGLTLIFGIMGVVNLAHGSFYMLGAYLAWSLSAQLGSLTLAIVVGAVLSVVFGLAL EWLLFRHFYKRDHLDQVLLTFGLIYIFEELRSILWGDDVHGVTIPDLLGASIPLTENLSYPVYRLFMSGVCIALALGLYG LISRTRLGMKIRAGAFNREMAESLGINIKRIHAVVFALGVGLAAVAGMIAAPIASVYPNMGSQVLIMCFVVVVIGGIGSV RGALIAALLVGLVDTFGKVLLPSVAGMLVYMLMAGVLLWKPEGLFKQ >Mature_287_residues MDIANFLIQLLNSVQYGLLLFMLAAGLTLIFGIMGVVNLAHGSFYMLGAYLAWSLSAQLGSLTLAIVVGAVLSVVFGLAL EWLLFRHFYKRDHLDQVLLTFGLIYIFEELRSILWGDDVHGVTIPDLLGASIPLTENLSYPVYRLFMSGVCIALALGLYG LISRTRLGMKIRAGAFNREMAESLGINIKRIHAVVFALGVGLAAVAGMIAAPIASVYPNMGSQVLIMCFVVVVIGGIGSV RGALIAALLVGLVDTFGKVLLPSVAGMLVYMLMAGVLLWKPEGLFKQ
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=296, Percent_Identity=29.7297297297297, Blast_Score=85, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 30824; Mature: 30824
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIANFLIQLLNSVQYGLLLFMLAAGLTLIFGIMGVVNLAHGSFYMLGAYLAWSLSAQLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH SLTLAIVVGAVLSVVFGLALEWLLFRHFYKRDHLDQVLLTFGLIYIFEELRSILWGDDVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GVTIPDLLGASIPLTENLSYPVYRLFMSGVCIALALGLYGLISRTRLGMKIRAGAFNREM CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHH AESLGINIKRIHAVVFALGVGLAAVAGMIAAPIASVYPNMGSQVLIMCFVVVVIGGIGSV HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH RGALIAALLVGLVDTFGKVLLPSVAGMLVYMLMAGVLLWKPEGLFKQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MDIANFLIQLLNSVQYGLLLFMLAAGLTLIFGIMGVVNLAHGSFYMLGAYLAWSLSAQLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH SLTLAIVVGAVLSVVFGLALEWLLFRHFYKRDHLDQVLLTFGLIYIFEELRSILWGDDVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GVTIPDLLGASIPLTENLSYPVYRLFMSGVCIALALGLYGLISRTRLGMKIRAGAFNREM CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHH AESLGINIKRIHAVVFALGVGLAAVAGMIAAPIASVYPNMGSQVLIMCFVVVVIGGIGSV HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH RGALIAALLVGLVDTFGKVLLPSVAGMLVYMLMAGVLLWKPEGLFKQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]