| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788844
Identifier: 91788844
GI number: 91788844
Start: 3139369
End: 3140556
Strand: Direct
Name: 91788844
Synonym: Bpro_2984
Alternate gene names: NA
Gene position: 3139369-3140556 (Clockwise)
Preceding gene: 91788843
Following gene: 91788845
Centisome position: 60.37
GC content: 62.79
Gene sequence:
>1188_bases ATGACCTCACGCCGACTTGTTTTGACCCGCAGTGCTGCCGTTATCGGCGCCGCATCCACTGGCCTGCTGCTGCCCGAAAT CGTGCGCGCACAGTCGGGCAAGGTGCGTGTGGGCTTCATGTTGCCCTACACCGGCACCTTTGCCCAACTCGGGGTGGCCA TTGAAAACGGCTTTCGCCTGGCGATCAATGAGCAAGGCGGCAAGCTGGGCGGCCGCGAGATCGAATACTTCAAGGTCGAC GATGAGTCCGAGCCGTCCAAAGGCATTGAAAACGCCAGCAAGCTGGTGCAACGCGACAAGGTCGATGTACTGGTCGGCAC GGTGCACTCCGGTGTGCAGATGGGTATCCAGAAGGTCGCGCGCGACAGCGGCGTACTGAGCCTGATTCCCAACGCGGGCG TGCATGCCGCCACCCGCAGCCTGTGCGCACCCAATGTGTTCCGTACCTCCTTCAGCAACTCGCAACCTACCCGCGCCCTG GGTCAGGCCATGATCGCAAAAGGCCATAAAAAAGCCGTCTGGATCACCTGGAAATATGCAGCCGGCGACGAGGCCTTTGA AGGCTTCAAGGAAAGCTACACAGCGGCCGGCGGCACCATTATCAAGGAACTGGGCCTGCCCTTCCCCAACGTTGAATTCC AGGCGCTGCTGACCGAAATCGCCGCACTCAAGCCCGATGCCGTGGCCTGCTTCTTCGCCGGCGGCGGCGCCGCGAAGTTC ATCCGCGACTACGCAGCGGCGGGCCTCAAAGGCAAGATCCCGCTCTACGGTTCCGGCTTCCTGACCGAAGGCGTGCTGGA CGCGGCCGGCCCTGCGGCGGACGGCATCATCACCACCATGCACTACAGCGACTCGCTGGACACGCCGCGCAACAAGAAAT TCCGCCTCGACTACGCCAAAGCCTTCAAGACGCAACCCGATGTGTACGCGGTGCAGGGCTATGACACCGGCCTGCTGCTG ATCCAGGGCGCCAACGCCGTCAAGGGCGACCTGGCCAACAAGCCCGCGCTCTACAAGGCCATGGAAGGCGCCACCATCGA CAGCCCGCGCGGCAAGTGGACCATGAGCAAGGCACACAACCCGGTGCAGGACATGTACCTGCGTGTGGTGGAAAACAAGG AAAACAAGGTGCTCGGCGTTGCGGCCAAGGCACTGGCCGACTCCGGCGCCGGCTGCAAGATGGGCTAG
Upstream 100 bases:
>100_bases ACAATTTAATCTTCAATCTCGGGTTTTACACTAGGGCTGCAGGCGCACCGCACCCTTAATATCCGTCTGGTACGTTTCCG TCTCAACCAGGAGTTTTTCC
Downstream 100 bases:
>100_bases GCATGGCCCCCACGGTCGCTCACTGCGTGTAGCTCCCGAGGCCTTGCAGGCCGCGGCTCGCGAGACGCTTCGCCTCTGTC GCCTGTCCAAAGCTGCTCAA
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MTSRRLVLTRSAAVIGAASTGLLLPEIVRAQSGKVRVGFMLPYTGTFAQLGVAIENGFRLAINEQGGKLGGREIEYFKVD DESEPSKGIENASKLVQRDKVDVLVGTVHSGVQMGIQKVARDSGVLSLIPNAGVHAATRSLCAPNVFRTSFSNSQPTRAL GQAMIAKGHKKAVWITWKYAAGDEAFEGFKESYTAAGGTIIKELGLPFPNVEFQALLTEIAALKPDAVACFFAGGGAAKF IRDYAAAGLKGKIPLYGSGFLTEGVLDAAGPAADGIITTMHYSDSLDTPRNKKFRLDYAKAFKTQPDVYAVQGYDTGLLL IQGANAVKGDLANKPALYKAMEGATIDSPRGKWTMSKAHNPVQDMYLRVVENKENKVLGVAAKALADSGAGCKMG
Sequences:
>Translated_395_residues MTSRRLVLTRSAAVIGAASTGLLLPEIVRAQSGKVRVGFMLPYTGTFAQLGVAIENGFRLAINEQGGKLGGREIEYFKVD DESEPSKGIENASKLVQRDKVDVLVGTVHSGVQMGIQKVARDSGVLSLIPNAGVHAATRSLCAPNVFRTSFSNSQPTRAL GQAMIAKGHKKAVWITWKYAAGDEAFEGFKESYTAAGGTIIKELGLPFPNVEFQALLTEIAALKPDAVACFFAGGGAAKF IRDYAAAGLKGKIPLYGSGFLTEGVLDAAGPAADGIITTMHYSDSLDTPRNKKFRLDYAKAFKTQPDVYAVQGYDTGLLL IQGANAVKGDLANKPALYKAMEGATIDSPRGKWTMSKAHNPVQDMYLRVVENKENKVLGVAAKALADSGAGCKMG >Mature_394_residues TSRRLVLTRSAAVIGAASTGLLLPEIVRAQSGKVRVGFMLPYTGTFAQLGVAIENGFRLAINEQGGKLGGREIEYFKVDD ESEPSKGIENASKLVQRDKVDVLVGTVHSGVQMGIQKVARDSGVLSLIPNAGVHAATRSLCAPNVFRTSFSNSQPTRALG QAMIAKGHKKAVWITWKYAAGDEAFEGFKESYTAAGGTIIKELGLPFPNVEFQALLTEIAALKPDAVACFFAGGGAAKFI RDYAAAGLKGKIPLYGSGFLTEGVLDAAGPAADGIITTMHYSDSLDTPRNKKFRLDYAKAFKTQPDVYAVQGYDTGLLLI QGANAVKGDLANKPALYKAMEGATIDSPRGKWTMSKAHNPVQDMYLRVVENKENKVLGVAAKALADSGAGCKMG
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 41882; Mature: 41750
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRRLVLTRSAAVIGAASTGLLLPEIVRAQSGKVRVGFMLPYTGTFAQLGVAIENGFRL CCCCEEEEEECCEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHCEEEECCEEE AINEQGGKLGGREIEYFKVDDESEPSKGIENASKLVQRDKVDVLVGTVHSGVQMGIQKVA EEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHH RDSGVLSLIPNAGVHAATRSLCAPNVFRTSFSNSQPTRALGQAMIAKGHKKAVWITWKYA HCCCCEEECCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEC AGDEAFEGFKESYTAAGGTIIKELGLPFPNVEFQALLTEIAALKPDAVACFFAGGGAAKF CCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHH IRDYAAAGLKGKIPLYGSGFLTEGVLDAAGPAADGIITTMHYSDSLDTPRNKKFRLDYAK HHHHHHCCCCCCCCEEECCCHHHCCHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEHHH AFKTQPDVYAVQGYDTGLLLIQGANAVKGDLANKPALYKAMEGATIDSPRGKWTMSKAHN HHCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEHHHCCC PVQDMYLRVVENKENKVLGVAAKALADSGAGCKMG CHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCCCC >Mature Secondary Structure TSRRLVLTRSAAVIGAASTGLLLPEIVRAQSGKVRVGFMLPYTGTFAQLGVAIENGFRL CCCEEEEEECCEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHCEEEECCEEE AINEQGGKLGGREIEYFKVDDESEPSKGIENASKLVQRDKVDVLVGTVHSGVQMGIQKVA EEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHH RDSGVLSLIPNAGVHAATRSLCAPNVFRTSFSNSQPTRALGQAMIAKGHKKAVWITWKYA HCCCCEEECCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEC AGDEAFEGFKESYTAAGGTIIKELGLPFPNVEFQALLTEIAALKPDAVACFFAGGGAAKF CCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHH IRDYAAAGLKGKIPLYGSGFLTEGVLDAAGPAADGIITTMHYSDSLDTPRNKKFRLDYAK HHHHHHCCCCCCCCEEECCCHHHCCHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEHHH AFKTQPDVYAVQGYDTGLLLIQGANAVKGDLANKPALYKAMEGATIDSPRGKWTMSKAHN HHCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEHHHCCC PVQDMYLRVVENKENKVLGVAAKALADSGAGCKMG CHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA