| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788792
Identifier: 91788792
GI number: 91788792
Start: 3094527
End: 3095567
Strand: Direct
Name: 91788792
Synonym: Bpro_2932
Alternate gene names: NA
Gene position: 3094527-3095567 (Clockwise)
Preceding gene: 91788791
Following gene: 91788793
Centisome position: 59.51
GC content: 61.67
Gene sequence:
>1041_bases ATGAACCCAATCCATAAGGCAAGCCCACAGGGCATGCAACGCAGGCAAGTGCTGGCCGGGGCCATGGCGGCAGCGCTCCC CTGCCTGCCCGCCGTTTCCTCGGCTGCAGCAGCAAAGTCGATTCTGGTCGGCGGCCTGCCTGTTACCTGCAACCTCACCC TGCCCGTCGCCTGCGTGGCCAAGGCCGCCAGCAATGCCAAGGGCGGCGGCCCGGCGTTTGAGTTTGAATACAGCAAGTAC AGCGGCTGGCCGGAGATCAAGGAGTCCCTGATGACGGGCCGCATCCAGGCGGCCTACATGCTGGCGCCGCTGGTGATGGA CCTGACCGACAAGAAAATTCCCCTCAAGATCGTCTCGCTGGGGCACCGCTCGGGCGCGGTCATCATGGTGCGCACTGATT CCGCGCACAAGCGATTTACCGACCTGAAAGGCAAAAGAATCGCCATCCCGAGCCGCTTTGCTGTCGATTTTTTGTTCCTG CGCAAGATGCTGGCCAAAGAGGGCATGACGCCCAAGGACATCGAAATCATCGAGATGGCTCCGCCCGACATGCCTGCCGC CCTGTACGCCAAAGCGGTGGATGCCTATTGCACCGGCGAGCCCTTCGGGGCGGCGGCGCAGCGCGCGGGCTATGCCCGTC CGCTGTCCATGACACGCGACGAATGGCGCAACTACATCTGCTGCGTGCTCACGGTGCGCGAAGAACTGATCAAGGACAAC CGCCCGCTGGTCCAGGAGCTGGTGAACTACGTGCAGGCGGCCGGCACCTGGCTTGACCTGGGGCCGGCCAGCCGCAACAA GGCCGTGGATATTGCTGCGGGCCGCAAATTTTTCAACCAGGACCCGAACATCATCCGCTTTGTCATGGAAAACCCGGCGG ACCGGGTGACCTATGGCGACCTGCGCATGATCAAGGCGGAGTTTGACGATTTGATGAAGCTGTCGCTCGAAGCCGGCACC ATCAAGCGCCCGGTCGCTTACGAATCCTATGTGGACGAGAGTTTTGTCAAAAACATCAAGCCCGTCACCATCACACTCTG A
Upstream 100 bases:
>100_bases CCATCAAGGGCTGCCAACCTACAATGAATGAATGTGCGCATCGGCCACTGGCCTTCCATCCCTTGCGGACTGACCATTCA ATGACAGCAAGGTACTGGCG
Downstream 100 bases:
>100_bases CTTCAGGACACCCCTTGAATCGCGCACTACCCGTCTTTTTTTCGCTGCTTCTTTTCGCCGCCACAGCTGGCGCGGCTGCC AGTTCGGGCCTGAAGTCCGG
Product: nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein
Products: NA
Alternate protein names: Nitrate Transporter Component NrtA; Response Regulator Receiver Modulated CheW Protein; NO3-/NO2-ABC Transporter; NLPA Lipoprotein; Nitrate Transporter Component; NlpA Lipoprotein; Multidomain Protein; Nitrate Transporter; ABC-Type Sulfonate Import System Periplasmic Component; Tat Pathway Signal Sequence; Sulfonate ABC Transporter Periplasmic Protein; ABC Transporter; Two-Component Fusion Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Nitrate Transporter Periplasmic Protein; Nitrate Transporter Protein; Nitrate ABC Transporter; Nitrate Transport Protein NrtA; Nitrate Transporter Periplasmic Component; Cyanate ABC Transporter
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MNPIHKASPQGMQRRQVLAGAMAAALPCLPAVSSAAAAKSILVGGLPVTCNLTLPVACVAKAASNAKGGGPAFEFEYSKY SGWPEIKESLMTGRIQAAYMLAPLVMDLTDKKIPLKIVSLGHRSGAVIMVRTDSAHKRFTDLKGKRIAIPSRFAVDFLFL RKMLAKEGMTPKDIEIIEMAPPDMPAALYAKAVDAYCTGEPFGAAAQRAGYARPLSMTRDEWRNYICCVLTVREELIKDN RPLVQELVNYVQAAGTWLDLGPASRNKAVDIAAGRKFFNQDPNIIRFVMENPADRVTYGDLRMIKAEFDDLMKLSLEAGT IKRPVAYESYVDESFVKNIKPVTITL
Sequences:
>Translated_346_residues MNPIHKASPQGMQRRQVLAGAMAAALPCLPAVSSAAAAKSILVGGLPVTCNLTLPVACVAKAASNAKGGGPAFEFEYSKY SGWPEIKESLMTGRIQAAYMLAPLVMDLTDKKIPLKIVSLGHRSGAVIMVRTDSAHKRFTDLKGKRIAIPSRFAVDFLFL RKMLAKEGMTPKDIEIIEMAPPDMPAALYAKAVDAYCTGEPFGAAAQRAGYARPLSMTRDEWRNYICCVLTVREELIKDN RPLVQELVNYVQAAGTWLDLGPASRNKAVDIAAGRKFFNQDPNIIRFVMENPADRVTYGDLRMIKAEFDDLMKLSLEAGT IKRPVAYESYVDESFVKNIKPVTITL >Mature_346_residues MNPIHKASPQGMQRRQVLAGAMAAALPCLPAVSSAAAAKSILVGGLPVTCNLTLPVACVAKAASNAKGGGPAFEFEYSKY SGWPEIKESLMTGRIQAAYMLAPLVMDLTDKKIPLKIVSLGHRSGAVIMVRTDSAHKRFTDLKGKRIAIPSRFAVDFLFL RKMLAKEGMTPKDIEIIEMAPPDMPAALYAKAVDAYCTGEPFGAAAQRAGYARPLSMTRDEWRNYICCVLTVREELIKDN RPLVQELVNYVQAAGTWLDLGPASRNKAVDIAAGRKFFNQDPNIIRFVMENPADRVTYGDLRMIKAEFDDLMKLSLEAGT IKRPVAYESYVDESFVKNIKPVTITL
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37888; Mature: 37888
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPIHKASPQGMQRRQVLAGAMAAALPCLPAVSSAAAAKSILVGGLPVTCNLTLPVACVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH KAASNAKGGGPAFEFEYSKYSGWPEIKESLMTGRIQAAYMLAPLVMDLTDKKIPLKIVSL HHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE GHRSGAVIMVRTDSAHKRFTDLKGKRIAIPSRFAVDFLFLRKMLAKEGMTPKDIEIIEMA CCCCCEEEEEECCCHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC PPDMPAALYAKAVDAYCTGEPFGAAAQRAGYARPLSMTRDEWRNYICCVLTVREELIKDN CCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHCCEEEEEEHHHHHHHHCC RPLVQELVNYVQAAGTWLDLGPASRNKAVDIAAGRKFFNQDPNIIRFVMENPADRVTYGD CHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHCHHHHCCCCCEEEEEECCCCCCEEECH LRMIKAEFDDLMKLSLEAGTIKRPVAYESYVDESFVKNIKPVTITL HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEC >Mature Secondary Structure MNPIHKASPQGMQRRQVLAGAMAAALPCLPAVSSAAAAKSILVGGLPVTCNLTLPVACVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH KAASNAKGGGPAFEFEYSKYSGWPEIKESLMTGRIQAAYMLAPLVMDLTDKKIPLKIVSL HHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE GHRSGAVIMVRTDSAHKRFTDLKGKRIAIPSRFAVDFLFLRKMLAKEGMTPKDIEIIEMA CCCCCEEEEEECCCHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC PPDMPAALYAKAVDAYCTGEPFGAAAQRAGYARPLSMTRDEWRNYICCVLTVREELIKDN CCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHCCEEEEEEHHHHHHHHCC RPLVQELVNYVQAAGTWLDLGPASRNKAVDIAAGRKFFNQDPNIIRFVMENPADRVTYGD CHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHCHHHHCCCCCEEEEEECCCCCCEEECH LRMIKAEFDDLMKLSLEAGTIKRPVAYESYVDESFVKNIKPVTITL HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA