| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yedA [H]
Identifier: 91788672
GI number: 91788672
Start: 2953844
End: 2954776
Strand: Direct
Name: yedA [H]
Synonym: Bpro_2810
Alternate gene names: 91788672
Gene position: 2953844-2954776 (Clockwise)
Preceding gene: 91788670
Following gene: 91788673
Centisome position: 56.8
GC content: 63.24
Gene sequence:
>933_bases ATGGCGTGGATGAGCTCCGCAATCTCCCTCCCTTCCCCGACCGCCCGGGCTGCACCGCTGCTGGTCCCCGCCCTGATCGC CTGCTATGTGGTGTGGGGTTCCACCTACCTGGCGATCCGTTTCGCACTGGTGAGCTTCCCGCCTTTTTTCCAGATGGGCA CCCGCTTCCTGGTGGCGGGCATGCTGGTCATGGCCTGGGTGATCATTCGCAAGCAACAGCTCCCTACCCTGCGCGAATGG CGCAATGCGCTCGTGATCGGCACCTTGATGCTGGGCGGCGGCATGGGGCTCACCGCCAGTGCAGAAGTTCACATTGGCTC CGGCCTGATCGCCACCTTCATTGCGGTGGTTCCCCTGATGGTTTGCGCATGGGGTCTGTTGTTGGGCCAACGCCCCAGCC GGCTGGAACTGGCCGGCATGGCCGTGGGGCTGGCTGGCGTGCTGCTGCTGGTGAGAGGCGCCAGCTTTTCCGCGGCGCCC GTGGGCCTGGCCTGCATCGCCGGTGCAACCCTGCTGTGGTCGCTGGGCTCCGTGTTGTCCACCGAACGACTGCCCCTGGC CAGCGGCCCCGCGGGTTTCGCGAGTGAAATGTTGTGTGGCGGCGCGGTGTTAATGGCGATCTCTCTTGCACTGGGTGAGC AGCACGAGGTCGCCAGCAACTGGCCTTTCCAGCCCGCAGCCCTGGTGGCCTGGCTGTACCTCGTGGTGTTCGGCTCGCTG ATTGCGTTCAGCGCCTACATGTACTTGCTGGCCAATTCCTCCCCTGCTGTGGCCACCAGCTATGCCTTCGTGAACCCGCT GATCGCGATTTTTCTGGGTGCGTTTTTTGCCGGCGAGCATGTCACCCGTGGCGAGTGGATCGCTTGCGGCGTGATTCTCA CAGGCGTTTTTTTGATTTTCAGAGGTAAATCTGCAACAGGCGGGCGCAAATAA
Upstream 100 bases:
>100_bases CGTCAGTTTCTGTCATCATGCTTTTCAAGCGTTAAATTAAAAGCGATCTCCGTTCTTCACCTTTAATTCTGCATGGCTTG GCCGTTATTGGCAATTTACG
Downstream 100 bases:
>100_bases AGTGCTTTTTCGCTATGAAACTGCGTTTTTCTCCAGTAGCATCCGCATTGCCGCAAGGAAGTAGTTATCCCTGTGGTGAT TTATCAACTTCTAGAAGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MAWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAGMLVMAWVIIRKQQLPTLREW RNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLMVCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAP VGLACIAGATLLWSLGSVLSTERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIFRGKSATGGRK
Sequences:
>Translated_310_residues MAWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAGMLVMAWVIIRKQQLPTLREW RNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLMVCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAP VGLACIAGATLLWSLGSVLSTERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIFRGKSATGGRK >Mature_309_residues AWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAGMLVMAWVIIRKQQLPTLREWR NALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLMVCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAPV GLACIAGATLLWSLGSVLSTERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSLI AFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIFRGKSATGGRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
Organism=Escherichia coli, GI1788269, Length=281, Percent_Identity=41.9928825622776, Blast_Score=166, Evalue=2e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004779 - InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32466; Mature: 32335
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MLVMAWVIIRKQQLPTLREWRNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLM HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH VCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAPVGLACIAGATLLWSLGSVLS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH TERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHH IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIF HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RGKSATGGRK CCCCCCCCCC >Mature Secondary Structure AWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MLVMAWVIIRKQQLPTLREWRNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLM HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH VCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAPVGLACIAGATLLWSLGSVLS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH TERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHH IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIF HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RGKSATGGRK CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]