| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788673
Identifier: 91788673
GI number: 91788673
Start: 2954885
End: 2955343
Strand: Direct
Name: 91788673
Synonym: Bpro_2811
Alternate gene names: NA
Gene position: 2954885-2955343 (Clockwise)
Preceding gene: 91788672
Following gene: 91788674
Centisome position: 56.82
GC content: 54.9
Gene sequence:
>459_bases ATGGCAACTGCGAAAAAAGCACCGGCTAAAAAAGCGCCTGCAAAAAAGGCTGCTCCGGCAAAGAAAGTAGCTGCGAAGAA AGCAGCTCCTGCCAAGAAGGTCGCCGCCAAAAAAGCAGCGCCCGCCAAAAAGGTAGCTGCGAAGAAAGCAGCGCCTGCCA AGAAAGTTGCGGCCAAAAAGCCAGCAGCGAAAAAAGCGCCCGCCAAAAAGCGTACGCCCAATGCAGCGTTCATGAAAGCG CTGACCTTGAGCCCCGCCCTGGCTGCCGTGGTGGGCGACAAGCCTTTGCCACGCACGGAAATTGTCAGCAAGCTGTGGGT TTACATCAAATCCAAGGGCCTGCAGGACAAGGTCAACAAGCGCATGATCAACGCCGACGAAAAGCTCAAAGCCGTTTTCG GCAAACCGCAAGTGTCGATGTTCGAAATGGCCGGCCTGATTGGCAAGCACGTCAAGTAA
Upstream 100 bases:
>100_bases TTCGCTATGAAACTGCGTTTTTCTCCAGTAGCATCCGCATTGCCGCAAGGAAGTAGTTATCCCTGTGGTGATTTATCAAC TTCTAGAAGGAAAATCAATC
Downstream 100 bases:
>100_bases TCGGCTTTTGCCGACTCCCCAAAGGCCGGTTTCCACCGGCCTTTTTTTATGCTCCGACGCATTGCCTGTCGGAAGCGGCG CCACGAAACGAGTCGACGGA
Product: hypothetical protein
Products: NA
Alternate protein names: DNA poisomerase III; SWIB/MDM2 Domain Protein; SwiB Complex Protein; SWIB Complex; SWIB/MDM2 Domain Superfamily; DNA poisomerase Domain-Containing Protein; Swib/Mdm2 Domain Protein; SWIB Complex Protein
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MATAKKAPAKKAPAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKPAAKKAPAKKRTPNAAFMKA LTLSPALAAVVGDKPLPRTEIVSKLWVYIKSKGLQDKVNKRMINADEKLKAVFGKPQVSMFEMAGLIGKHVK
Sequences:
>Translated_152_residues MATAKKAPAKKAPAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKPAAKKAPAKKRTPNAAFMKA LTLSPALAAVVGDKPLPRTEIVSKLWVYIKSKGLQDKVNKRMINADEKLKAVFGKPQVSMFEMAGLIGKHVK >Mature_151_residues ATAKKAPAKKAPAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKPAAKKAPAKKRTPNAAFMKAL TLSPALAAVVGDKPLPRTEIVSKLWVYIKSKGLQDKVNKRMINADEKLKAVFGKPQVSMFEMAGLIGKHVK
Specific function: Unknown
COG id: COG5531
COG function: function code B; SWIB-domain-containing proteins implicated in chromatin remodeling
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6324869, Length=96, Percent_Identity=39.5833333333333, Blast_Score=74, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323889, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15893; Mature: 15761
Theoretical pI: Translated: 11.59; Mature: 11.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAKKAPAKKAPAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKK CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHCC PAAKKAPAKKRTPNAAFMKALTLSPALAAVVGDKPLPRTEIVSKLWVYIKSKGLQDKVNK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH RMINADEKLKAVFGKPQVSMFEMAGLIGKHVK HHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure ATAKKAPAKKAPAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKKAAPAKKVAAKK CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHCC PAAKKAPAKKRTPNAAFMKALTLSPALAAVVGDKPLPRTEIVSKLWVYIKSKGLQDKVNK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH RMINADEKLKAVFGKPQVSMFEMAGLIGKHVK HHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA