| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is lysN [H]
Identifier: 91788608
GI number: 91788608
Start: 2887411
End: 2888604
Strand: Reverse
Name: lysN [H]
Synonym: Bpro_2746
Alternate gene names: 91788608
Gene position: 2888604-2887411 (Counterclockwise)
Preceding gene: 91788610
Following gene: 91788607
Centisome position: 55.55
GC content: 62.56
Gene sequence:
>1194_bases ATGCCGCTTCAATTTGCCGACCGCCTTAACAACGTCGAAACCTCCGCCATCCGCGAGCTTTTCAAGCTGCTGGGCAAGCC CGGCATCATCAGCTTTGCCGGCGGCTTTCCCGACCCTGCCATGTTTGATGTGGAGGGCCTCAAGGAAGCCAGCGGCAATG TGCTGAACGAAGAAGCCGGCCCGGCCCTGCAATACGGCGCCACCGAAGGCTACCAGCCGCTGCGCGACCAGCTCAGCACC TTCATGGCCACCAAGGGCTCCCTGGTGGCTGCCGACCAGCTGATCGTGACCACCGGCAGCCAGCAGGCGCTGGACCTGAT CGGCAAAACCATGATCTCGCCCGGCGACAAGGTGATCGTGGAAGGCCCCACCTTTCTGGCCACCATCCAGTGCTTCAGGC TCTACGGCGCAGAACTCATCAGCGCACCCATCGACGCCCACGGCGTGAAGACAGACGAGCTGGAAAAATTGATCGCCCAG CACAAGCCGAAGTTTGTGTACCTGATTCCCACTTTCGGCAACCCCAGCGGCGCCCTGTTGAGCCTGGAGCGCCGCAAGAA GGTGCTGGAGCTGGCCGTCAAATACAACACGCTGATGGTTGAAGACGACCCCTACGGCGACCTGTATTTTTCCGAGCCAC CACCACCGTCTTTATTGGCCTTGAGCGACACCGTGCCCGGCAGCCGCGACCTGCTGGCGCATTGCGGCTCGCTCAGCAAA GTGCTGTCACCCGGCCTGCGCATTGGCTGGCTGATTGCCCAGCCCGAGCTGCTGGCCAAAGCCACCATGTGCAAGCAGTT CAGTGACGCCCACACCAGCACCTTTGCCCAGGCCACGGCGTCCCAATACCTCAAATGCGGCCGCATGCCTTCCACATTGA CCCGTGTGCGCCAGGTGTATGCCGAGCGCGCCGCGGCCATGGGCGCTGCACTGAAGCGCGAACTGGGCGACGCGATCGAT TTTGTACAGCCGCAAGGCGGCCTGTTCTTCTGGGCCCGCCTCACGGGTGCCGGCGGCAAGACGAAAGATGCCGGCGAGTT TGCGAAGAAGGCGATTGAGCAGGGCGTGGCCTTTGTGCCGGGCGCGCCGTTTTATGCGAGCAATCCGGATGTCTCCACAT TGAGGCTCAGCTTTGCCACGGCGGATGTGGCGAAGATTGAGGAAGGCGTGGGGCGCTTGGGCAAGGCGCTTTAG
Upstream 100 bases:
>100_bases ACGCTCGTATACTTCAATTCAGTAACGGGCTGTGGGTTGGCTGCTCGCAAGGTGGCAAAAAACGGCTCGATGTGTTCCTT CTTCATGGATCGATTCTCCC
Downstream 100 bases:
>100_bases CTGGATGCGCTGGTGATTTTGAATCGGTTTTGAGAGTTGTGGTTCGATCCACCGCATGGGGACTGTATCAGCGCCTATCA AGAGTACAAGATCGGACGGT
Product: class I/II aminotransferase
Products: NA
Alternate protein names: 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT [H]
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MPLQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDPAMFDVEGLKEASGNVLNEEAGPALQYGATEGYQPLRDQLST FMATKGSLVAADQLIVTTGSQQALDLIGKTMISPGDKVIVEGPTFLATIQCFRLYGAELISAPIDAHGVKTDELEKLIAQ HKPKFVYLIPTFGNPSGALLSLERRKKVLELAVKYNTLMVEDDPYGDLYFSEPPPPSLLALSDTVPGSRDLLAHCGSLSK VLSPGLRIGWLIAQPELLAKATMCKQFSDAHTSTFAQATASQYLKCGRMPSTLTRVRQVYAERAAAMGAALKRELGDAID FVQPQGGLFFWARLTGAGGKTKDAGEFAKKAIEQGVAFVPGAPFYASNPDVSTLRLSFATADVAKIEEGVGRLGKAL
Sequences:
>Translated_397_residues MPLQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDPAMFDVEGLKEASGNVLNEEAGPALQYGATEGYQPLRDQLST FMATKGSLVAADQLIVTTGSQQALDLIGKTMISPGDKVIVEGPTFLATIQCFRLYGAELISAPIDAHGVKTDELEKLIAQ HKPKFVYLIPTFGNPSGALLSLERRKKVLELAVKYNTLMVEDDPYGDLYFSEPPPPSLLALSDTVPGSRDLLAHCGSLSK VLSPGLRIGWLIAQPELLAKATMCKQFSDAHTSTFAQATASQYLKCGRMPSTLTRVRQVYAERAAAMGAALKRELGDAID FVQPQGGLFFWARLTGAGGKTKDAGEFAKKAIEQGVAFVPGAPFYASNPDVSTLRLSFATADVAKIEEGVGRLGKAL >Mature_396_residues PLQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDPAMFDVEGLKEASGNVLNEEAGPALQYGATEGYQPLRDQLSTF MATKGSLVAADQLIVTTGSQQALDLIGKTMISPGDKVIVEGPTFLATIQCFRLYGAELISAPIDAHGVKTDELEKLIAQH KPKFVYLIPTFGNPSGALLSLERRKKVLELAVKYNTLMVEDDPYGDLYFSEPPPPSLLALSDTVPGSRDLLAHCGSLSKV LSPGLRIGWLIAQPELLAKATMCKQFSDAHTSTFAQATASQYLKCGRMPSTLTRVRQVYAERAAAMGAALKRELGDAIDF VQPQGGLFFWARLTGAGGKTKDAGEFAKKAIEQGVAFVPGAPFYASNPDVSTLRLSFATADVAKIEEGVGRLGKAL
Specific function: Catalyzes the transfer of an amino group between 2- oxoadipate (2-OA) and glutamate (Glu) to yield alpha-aminodipate (AAA). It can also transaminate glutamate, leucine, and aromatic amino acids. It also conbtributes in the biosynthesis of other amino acid
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=409, Percent_Identity=31.0513447432763, Blast_Score=165, Evalue=6e-41, Organism=Homo sapiens, GI33469970, Length=409, Percent_Identity=31.0513447432763, Blast_Score=165, Evalue=6e-41, Organism=Homo sapiens, GI4507369, Length=203, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=2e-13, Organism=Escherichia coli, GI1787710, Length=370, Percent_Identity=28.3783783783784, Blast_Score=155, Evalue=5e-39, Organism=Escherichia coli, GI1790797, Length=371, Percent_Identity=27.2237196765499, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1788722, Length=309, Percent_Identity=28.1553398058252, Blast_Score=90, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17567369, Length=270, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321236, Length=480, Percent_Identity=25.4166666666667, Blast_Score=114, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6321000, Length=428, Percent_Identity=25.7009345794392, Blast_Score=110, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6321929, Length=294, Percent_Identity=23.469387755102, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI21356535, Length=400, Percent_Identity=27.75, Blast_Score=131, Evalue=6e-31,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.39 [H]
Molecular weight: Translated: 42502; Mature: 42371
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDPAMFDVEGLKEASGNVLNEEAG CCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEECHHHHHHHCCCCCCCCCC PALQYGATEGYQPLRDQLSTFMATKGSLVAADQLIVTTGSQQALDLIGKTMISPGDKVIV CCEECCCCCCCHHHHHHHHHHHHCCCCEEEECEEEEECCCHHHHHHHHHHHCCCCCEEEE EGPTFLATIQCFRLYGAELISAPIDAHGVKTDELEKLIAQHKPKFVYLIPTFGNPSGALL ECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEE SLERRKKVLELAVKYNTLMVEDDPYGDLYFSEPPPPSLLALSDTVPGSRDLLAHCGSLSK EHHHHHHHHHHHHHHCEEEECCCCCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHHHHH VLSPGLRIGWLIAQPELLAKATMCKQFSDAHTSTFAQATASQYLKCGRMPSTLTRVRQVY HHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AERAAAMGAALKRELGDAIDFVQPQGGLFFWARLTGAGGKTKDAGEFAKKAIEQGVAFVP HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCEECC GAPFYASNPDVSTLRLSFATADVAKIEEGVGRLGKAL CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PLQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDPAMFDVEGLKEASGNVLNEEAG CCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEECHHHHHHHCCCCCCCCCC PALQYGATEGYQPLRDQLSTFMATKGSLVAADQLIVTTGSQQALDLIGKTMISPGDKVIV CCEECCCCCCCHHHHHHHHHHHHCCCCEEEECEEEEECCCHHHHHHHHHHHCCCCCEEEE EGPTFLATIQCFRLYGAELISAPIDAHGVKTDELEKLIAQHKPKFVYLIPTFGNPSGALL ECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEE SLERRKKVLELAVKYNTLMVEDDPYGDLYFSEPPPPSLLALSDTVPGSRDLLAHCGSLSK EHHHHHHHHHHHHHHCEEEECCCCCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHHHHH VLSPGLRIGWLIAQPELLAKATMCKQFSDAHTSTFAQATASQYLKCGRMPSTLTRVRQVY HHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AERAAAMGAALKRELGDAIDFVQPQGGLFFWARLTGAGGKTKDAGEFAKKAIEQGVAFVP HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCEECC GAPFYASNPDVSTLRLSFATADVAKIEEGVGRLGKAL CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA