| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788573
Identifier: 91788573
GI number: 91788573
Start: 2856766
End: 2857299
Strand: Direct
Name: 91788573
Synonym: Bpro_2711
Alternate gene names: NA
Gene position: 2856766-2857299 (Clockwise)
Preceding gene: 91788571
Following gene: 91788575
Centisome position: 54.94
GC content: 53.93
Gene sequence:
>534_bases ATGGTTATTGATTTAAATATATCCAAAATAACGATGAAAATCCATCCACAAACCATTCATTGGGACAAAAACCAGCCTTC GAAACGCACCATGAGTCTCCAAAAATCAGTCAAGGAACGTTTTTTCCACGCCCTCGGGTTTGAAGTGGTGGCGATCGCTA TTTGCGCCCCATTGGGCACCTGGCTGCTCGGTTATTCGCTGGCGCACATGGGTTTGCTGACCTTGATGATCTCGCTGATC GCGATGACCTGGAACATGACGTTCAACGCACTTTTTGACCGGGCGCAGCGCCGCTGGGGATTCCGGCGGACCCTGTTGGC CCGCGGCGTTCATTCCGTCCTGTTCGAAACGGGCTTGATTGTGGCCGTCGTGCCGCTGGCCGCCTGGTGGCTGGACATTG GCCTGTGGGAAGCGTTTGTGCTGGACATTGGCATCGTGCTGTTTTTCCTGCCGTATACCTTCGCCTTCAACTGGATCTAC GACCATCTGCGTGCCGTGGTTATTGCACGTAAAAACCGCCTGTCAGCGGCCTGA
Upstream 100 bases:
>100_bases GTGGCGGCCTCGGCAAAGGCCGTCAGGGCTTCCGGGGAATGACGCATCGGGCTATCTCCTCATTCCATCACATCATCGCG TCAAACCATCAATTTTTTAG
Downstream 100 bases:
>100_bases GGAATGCCCCCGAAAAGAGGGCGTATGCGAGCAACCCTCTACTTCATCTGAACTGATCCACTCACACTCACCAGCACCGT GCTCTTGCCAGCCTCCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Pair Domain Protein; Transmembrane Pair; Transmembrane Pair Permease Of Facilitator Superfamily; Transmembrane Pair Family Protein; Bacterial Transmembrane Pair Family; Outer Membrane Protein; Transmembrane Pair Protein; Transmembrane Protein; Bacterial Transmembrane Pair Family Protein
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MVIDLNISKITMKIHPQTIHWDKNQPSKRTMSLQKSVKERFFHALGFEVVAIAICAPLGTWLLGYSLAHMGLLTLMISLI AMTWNMTFNALFDRAQRRWGFRRTLLARGVHSVLFETGLIVAVVPLAAWWLDIGLWEAFVLDIGIVLFFLPYTFAFNWIY DHLRAVVIARKNRLSAA
Sequences:
>Translated_177_residues MVIDLNISKITMKIHPQTIHWDKNQPSKRTMSLQKSVKERFFHALGFEVVAIAICAPLGTWLLGYSLAHMGLLTLMISLI AMTWNMTFNALFDRAQRRWGFRRTLLARGVHSVLFETGLIVAVVPLAAWWLDIGLWEAFVLDIGIVLFFLPYTFAFNWIY DHLRAVVIARKNRLSAA >Mature_177_residues MVIDLNISKITMKIHPQTIHWDKNQPSKRTMSLQKSVKERFFHALGFEVVAIAICAPLGTWLLGYSLAHMGLLTLMISLI AMTWNMTFNALFDRAQRRWGFRRTLLARGVHSVLFETGLIVAVVPLAAWWLDIGLWEAFVLDIGIVLFFLPYTFAFNWIY DHLRAVVIARKNRLSAA
Specific function: Unknown
COG id: COG4125
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20315; Mature: 20315
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIDLNISKITMKIHPQTIHWDKNQPSKRTMSLQKSVKERFFHALGFEVVAIAICAPLGT CEEECEEEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLLGYSLAHMGLLTLMISLIAMTWNMTFNALFDRAQRRWGFRRTLLARGVHSVLFETGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVVPLAAWWLDIGLWEAFVLDIGIVLFFLPYTFAFNWIYDHLRAVVIARKNRLSAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVIDLNISKITMKIHPQTIHWDKNQPSKRTMSLQKSVKERFFHALGFEVVAIAICAPLGT CEEECEEEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLLGYSLAHMGLLTLMISLIAMTWNMTFNALFDRAQRRWGFRRTLLARGVHSVLFETGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVVPLAAWWLDIGLWEAFVLDIGIVLFFLPYTFAFNWIYDHLRAVVIARKNRLSAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA