| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is aceE [H]
Identifier: 91788534
GI number: 91788534
Start: 2808568
End: 2811309
Strand: Reverse
Name: aceE [H]
Synonym: Bpro_2672
Alternate gene names: 91788534
Gene position: 2811309-2808568 (Counterclockwise)
Preceding gene: 91788538
Following gene: 91788533
Centisome position: 54.06
GC content: 60.69
Gene sequence:
>2742_bases ATGGCTGCCAATCCAAATGAAGCCGGTGCCGACAACCTACGCGCCGCCGCGAACGATGCCTTGGGTGAGAACACCCTGGA CAAAGACAAGCAGGAGACCCGGGAGTGGATGGATGCCCTCTCGGCGGTCATTGAAAGCGAGGGCCCGGAACGTGCCCACT TCCTGCTTGAGCAACTGCTCGAACATGCCCGCCAGAAAAGCATTGACATGCCTTTCTCGGCCAACACCGCTTACGTCAAC ACCATAGAAACCGACCAGGAAGAGCGCTCCCCCGGCAACCTCGAAATTGAAGAACGCCTGCGCGCCTACATGCGCTGGAA TGCCATGGCCATGGTGGTCAAGGCCAACCGCCTGCATCCCGCGGATGGCGGCGATCTGGGTGGACATATCGGCTCGTTTG CCTCGCTGGCCAGTCTCTTTGGTGCGGGCTTCAACCACTTCTGGCATGCCGAGAGCGAGAACCATGGCGGCGATTGCCTC TACATCCAGGGGCATGTGTCGCCTGGCGTCTACGCACGCGCTTACCTTGAAGGCCGCCTGACGGAAGAGCAACTGCTCAA TTTCCGCCAGGAAGTTGCTGGCAAGGGGCTTTCCAGCTACCCGCACCCCAAGCTGATGCCCGAATTCTGGCAGTTCCCCA CGGTCTCCATGGGCCTGGGCCCCCTGATGGCGATTTACCAGGCCAGGTTCCTCAAGTACCTGCACGCCCGCGGTATTGCC AACACCGAAAACCGCAAGGTCTGGGTGTTCTGTGGCGACGGTGAGATGGATGAAGTCGAATCGATGGGCGCCATCGGGCT GGCCGCGCGCGAGAAGCTCGACAACCTGGTGTTCGTCATCAACTGCAACCTGCAGCGTCTGGACGGCCCGGTCCGCGGCA ACGGCAAGATCATCCAGGAACTCGAAGGCGAGTTCCGCGGCGCCGGCTGGAATGTCATCAAGCTGATCTGGGGCAGCAAC TGGGATCCATTGCTGGCGCGCGACAAGGACGGCGCCTTGCGCAAAGTCATGATTGACACGCTGGACGGCGACTACCAGGC CATGAAGGCCAACGACGGCGCCTACGTGCGCAAGCATTTCTTTGGCCAGAACCCCAAGACGCTGGAGATGGTCTCCAAGA TGAGCGACGACGACATCTGGAACCTGCGCCGTGGCGGCCACGACTCGCAAAAGGTGTATGCGGCATTCCATGCGGCCGTC AATCACACCGGCCAGCCCACAGTGCTGCTGATCAAGACCGTCAAGGGTTTTGGCATGGGCAAGATTGGCGAGGGCAAAAA CACGGTGCATCAGACCAAGAAACTGACGGACGATGACATCAAGATCTTCCGCGACCGCTTCAACATCCCGATTCCCGACA GCCAGCTGGCCGACCTGCCGTTTTACAAGCCGGCCGATGACACCCCGGAAATGCGCTATCTGCACGAGCGGCGCAAGGCC CTGGGCGGTTACCTGCCGCACCGCCGCGTCAAGGCCGACGAGAGCTTTACCGTGCCTGCGCTCGAAACCTTCAAGGCCGT GCTCGAGCCGACCGCCGAAGGCCGTGAAATTTCCACCACGCAGGCCTACGTGCGCTTCCTCACGCAGCTGCTGCGCGACC AGGCACTCGGCCCACGCGTGGTGCCCATCCTGGTCGATGAGGCCCGCACCTTCGGCATGGAAGGCCTGTTCCGCCAGGTG GGCATCTACAACCCTGATGGCCAGAAGTACACGCCGGTCGATAAAGACCAGGTGATGTATTACAAGGAAGACGCCAAGGG CCAGATCCTGCAAGAGGGCATCAACGAGGCTGGTGGCATGAGCAGCTGGATCGCAGCGGCCACTTCGTACAGCACCAATA ACAGGATCATGGTCCCGTTCTACGTGTACTACTCGATGTTCGGTTTCCAGCGCATCGGCGACCTGGCCTGGGCGGCTGGC GACATGCAGGCACGTGGCTTCCTGTTGGGCGGCACCTCTGGCCGGACCACACTGAATGGCGAAGGCCTGCAGCACGAAGA CGGCCACAGCCACATCCTGGCCGGCACGATTCCCAACTGCATCAGCTACGACCCGACCTTTGCCCATGAGGTGGGTGTCA TCCTGCACCATGGCTTGAAGCGTATGGTGGAAAAGCAGGACAACGTGTATTTTTACCTCACGCTGCTCAATGAAAACTAT CCGATGCCAGGCCTCCAGCCCGGTACCGAAGAACAGATCATCAAGGGCATGTACCTCTGCAAGGAAGGCGCCAAGCTCAC GCCGCGCGTACAACTGCTGGGCTCCGGCACCATCCTGCGTGAATCGATTGCCGCGCAGGAACTGCTTGAGAAAGAGTGGG GTGTTGCCGCCAACGTGTGGAGCTGCCCGAGCTTCAATGAGTTGGCCCGCGATGGCCAGAACGCCGAACGCTGGAACCTG CTGCACCCGACCGACAAACCCCGCGTGCCTTTTGTGGGCGAGCAGCTCGACAAGCACGCCGGCCCGGTCGTTGCATCGAC CGACTACATGAAGGCTTACGCCGAGCAGATCCGGCCGTTTATCCCCAAGGGGCGCACCTACAAGGTCCTGGGCACCGATG GATTTGGCCGCAGCGACTTCCGCAGCAAGCTGCGCGAGCACTTTGAAATCAACCGCCACTACATCGTGATCGCGGCCCTG AAGGCGCTCAGCGAAGAGGGTACGGTTCCGGTTGCCAAGGTTGCCGAAGCCATCAAGAAGTACGGTATCAATGCCGACAA GATCAATCCCCTTTATGCCTGA
Upstream 100 bases:
>100_bases TTGCGTTTAAAACACGCCTTAGGGACAAGTCAGACACAAGCTTTGTGCGCAGCCTCAAAGTTGTGGTTCGGGTCAAACAA GCGTTACTCAGGAGACAAAA
Downstream 100 bases:
>100_bases TGCAGGTTTGATGCATTAGCCCGCAAGCAATCGGAGACAACAACATGGCAGTGGTAGATATTCAGGTTCCTGATATTGGG GACTTCGACGAAGTGACGGT
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 913; Mature: 912
Protein sequence:
>913_residues MAANPNEAGADNLRAAANDALGENTLDKDKQETREWMDALSAVIESEGPERAHFLLEQLLEHARQKSIDMPFSANTAYVN TIETDQEERSPGNLEIEERLRAYMRWNAMAMVVKANRLHPADGGDLGGHIGSFASLASLFGAGFNHFWHAESENHGGDCL YIQGHVSPGVYARAYLEGRLTEEQLLNFRQEVAGKGLSSYPHPKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIA NTENRKVWVFCGDGEMDEVESMGAIGLAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVIKLIWGSN WDPLLARDKDGALRKVMIDTLDGDYQAMKANDGAYVRKHFFGQNPKTLEMVSKMSDDDIWNLRRGGHDSQKVYAAFHAAV NHTGQPTVLLIKTVKGFGMGKIGEGKNTVHQTKKLTDDDIKIFRDRFNIPIPDSQLADLPFYKPADDTPEMRYLHERRKA LGGYLPHRRVKADESFTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDQALGPRVVPILVDEARTFGMEGLFRQV GIYNPDGQKYTPVDKDQVMYYKEDAKGQILQEGINEAGGMSSWIAAATSYSTNNRIMVPFYVYYSMFGFQRIGDLAWAAG DMQARGFLLGGTSGRTTLNGEGLQHEDGHSHILAGTIPNCISYDPTFAHEVGVILHHGLKRMVEKQDNVYFYLTLLNENY PMPGLQPGTEEQIIKGMYLCKEGAKLTPRVQLLGSGTILRESIAAQELLEKEWGVAANVWSCPSFNELARDGQNAERWNL LHPTDKPRVPFVGEQLDKHAGPVVASTDYMKAYAEQIRPFIPKGRTYKVLGTDGFGRSDFRSKLREHFEINRHYIVIAAL KALSEEGTVPVAKVAEAIKKYGINADKINPLYA
Sequences:
>Translated_913_residues MAANPNEAGADNLRAAANDALGENTLDKDKQETREWMDALSAVIESEGPERAHFLLEQLLEHARQKSIDMPFSANTAYVN TIETDQEERSPGNLEIEERLRAYMRWNAMAMVVKANRLHPADGGDLGGHIGSFASLASLFGAGFNHFWHAESENHGGDCL YIQGHVSPGVYARAYLEGRLTEEQLLNFRQEVAGKGLSSYPHPKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIA NTENRKVWVFCGDGEMDEVESMGAIGLAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVIKLIWGSN WDPLLARDKDGALRKVMIDTLDGDYQAMKANDGAYVRKHFFGQNPKTLEMVSKMSDDDIWNLRRGGHDSQKVYAAFHAAV NHTGQPTVLLIKTVKGFGMGKIGEGKNTVHQTKKLTDDDIKIFRDRFNIPIPDSQLADLPFYKPADDTPEMRYLHERRKA LGGYLPHRRVKADESFTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDQALGPRVVPILVDEARTFGMEGLFRQV GIYNPDGQKYTPVDKDQVMYYKEDAKGQILQEGINEAGGMSSWIAAATSYSTNNRIMVPFYVYYSMFGFQRIGDLAWAAG DMQARGFLLGGTSGRTTLNGEGLQHEDGHSHILAGTIPNCISYDPTFAHEVGVILHHGLKRMVEKQDNVYFYLTLLNENY PMPGLQPGTEEQIIKGMYLCKEGAKLTPRVQLLGSGTILRESIAAQELLEKEWGVAANVWSCPSFNELARDGQNAERWNL LHPTDKPRVPFVGEQLDKHAGPVVASTDYMKAYAEQIRPFIPKGRTYKVLGTDGFGRSDFRSKLREHFEINRHYIVIAAL KALSEEGTVPVAKVAEAIKKYGINADKINPLYA >Mature_912_residues AANPNEAGADNLRAAANDALGENTLDKDKQETREWMDALSAVIESEGPERAHFLLEQLLEHARQKSIDMPFSANTAYVNT IETDQEERSPGNLEIEERLRAYMRWNAMAMVVKANRLHPADGGDLGGHIGSFASLASLFGAGFNHFWHAESENHGGDCLY IQGHVSPGVYARAYLEGRLTEEQLLNFRQEVAGKGLSSYPHPKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIAN TENRKVWVFCGDGEMDEVESMGAIGLAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVIKLIWGSNW DPLLARDKDGALRKVMIDTLDGDYQAMKANDGAYVRKHFFGQNPKTLEMVSKMSDDDIWNLRRGGHDSQKVYAAFHAAVN HTGQPTVLLIKTVKGFGMGKIGEGKNTVHQTKKLTDDDIKIFRDRFNIPIPDSQLADLPFYKPADDTPEMRYLHERRKAL GGYLPHRRVKADESFTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDQALGPRVVPILVDEARTFGMEGLFRQVG IYNPDGQKYTPVDKDQVMYYKEDAKGQILQEGINEAGGMSSWIAAATSYSTNNRIMVPFYVYYSMFGFQRIGDLAWAAGD MQARGFLLGGTSGRTTLNGEGLQHEDGHSHILAGTIPNCISYDPTFAHEVGVILHHGLKRMVEKQDNVYFYLTLLNENYP MPGLQPGTEEQIIKGMYLCKEGAKLTPRVQLLGSGTILRESIAAQELLEKEWGVAANVWSCPSFNELARDGQNAERWNLL HPTDKPRVPFVGEQLDKHAGPVVASTDYMKAYAEQIRPFIPKGRTYKVLGTDGFGRSDFRSKLREHFEINRHYIVIAALK ALSEEGTVPVAKVAEAIKKYGINADKINPLYA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=891, Percent_Identity=58.8103254769921, Blast_Score=1090, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 102012; Mature: 101881
Theoretical pI: Translated: 6.49; Mature: 6.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAANPNEAGADNLRAAANDALGENTLDKDKQETREWMDALSAVIESEGPERAHFLLEQLL CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH EHARQKSIDMPFSANTAYVNTIETDQEERSPGNLEIEERLRAYMRWNAMAMVVKANRLHP HHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCC ADGGDLGGHIGSFASLASLFGAGFNHFWHAESENHGGDCLYIQGHVSPGVYARAYLEGRL CCCCCCCHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCEEEEEECCCCCCEEHHHHHCCC TEEQLLNFRQEVAGKGLSSYPHPKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIA CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHCCCC NTENRKVWVFCGDGEMDEVESMGAIGLAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQE CCCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHH LEGEFRGAGWNVIKLIWGSNWDPLLARDKDGALRKVMIDTLDGDYQAMKANDGAYVRKHF HHHHHCCCCCEEEEEEECCCCCCCEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHH FGQNPKTLEMVSKMSDDDIWNLRRGGHDSQKVYAAFHAAVNHTGQPTVLLIKTVKGFGMG CCCCCHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC KIGEGKNTVHQTKKLTDDDIKIFRDRFNIPIPDSQLADLPFYKPADDTPEMRYLHERRKA CCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LGGYLPHRRVKADESFTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDQALGPRV HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VPILVDEARTFGMEGLFRQVGIYNPDGQKYTPVDKDQVMYYKEDAKGQILQEGINEAGGM EEEEECHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCH SSWIAAATSYSTNNRIMVPFYVYYSMFGFQRIGDLAWAAGDMQARGFLLGGTSGRTTLNG HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECC EGLQHEDGHSHILAGTIPNCISYDPTFAHEVGVILHHGLKRMVEKQDNVYFYLTLLNENY CCCCCCCCCCEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC PMPGLQPGTEEQIIKGMYLCKEGAKLTPRVQLLGSGTILRESIAAQELLEKEWGVAANVW CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEECCC SCPSFNELARDGQNAERWNLLHPTDKPRVPFVGEQLDKHAGPVVASTDYMKAYAEQIRPF CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECHHHHHHHHHHHHCC IPKGRTYKVLGTDGFGRSDFRSKLREHFEINRHYIVIAALKALSEEGTVPVAKVAEAIKK CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHH YGINADKINPLYA HCCCCCCCCCCCC >Mature Secondary Structure AANPNEAGADNLRAAANDALGENTLDKDKQETREWMDALSAVIESEGPERAHFLLEQLL CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH EHARQKSIDMPFSANTAYVNTIETDQEERSPGNLEIEERLRAYMRWNAMAMVVKANRLHP HHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCC ADGGDLGGHIGSFASLASLFGAGFNHFWHAESENHGGDCLYIQGHVSPGVYARAYLEGRL CCCCCCCHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCEEEEEECCCCCCEEHHHHHCCC TEEQLLNFRQEVAGKGLSSYPHPKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIA CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHCCCC NTENRKVWVFCGDGEMDEVESMGAIGLAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQE CCCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHH LEGEFRGAGWNVIKLIWGSNWDPLLARDKDGALRKVMIDTLDGDYQAMKANDGAYVRKHF HHHHHCCCCCEEEEEEECCCCCCCEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHH FGQNPKTLEMVSKMSDDDIWNLRRGGHDSQKVYAAFHAAVNHTGQPTVLLIKTVKGFGMG CCCCCHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC KIGEGKNTVHQTKKLTDDDIKIFRDRFNIPIPDSQLADLPFYKPADDTPEMRYLHERRKA CCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LGGYLPHRRVKADESFTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDQALGPRV HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VPILVDEARTFGMEGLFRQVGIYNPDGQKYTPVDKDQVMYYKEDAKGQILQEGINEAGGM EEEEECHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCH SSWIAAATSYSTNNRIMVPFYVYYSMFGFQRIGDLAWAAGDMQARGFLLGGTSGRTTLNG HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECC EGLQHEDGHSHILAGTIPNCISYDPTFAHEVGVILHHGLKRMVEKQDNVYFYLTLLNENY CCCCCCCCCCEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC PMPGLQPGTEEQIIKGMYLCKEGAKLTPRVQLLGSGTILRESIAAQELLEKEWGVAANVW CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEECCC SCPSFNELARDGQNAERWNLLHPTDKPRVPFVGEQLDKHAGPVVASTDYMKAYAEQIRPF CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECHHHHHHHHHHHHCC IPKGRTYKVLGTDGFGRSDFRSKLREHFEINRHYIVIAALKALSEEGTVPVAKVAEAIKK CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHH YGINADKINPLYA HCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]