| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yfgL [H]
Identifier: 91788467
GI number: 91788467
Start: 2735294
End: 2736439
Strand: Reverse
Name: yfgL [H]
Synonym: Bpro_2605
Alternate gene names: 91788467
Gene position: 2736439-2735294 (Counterclockwise)
Preceding gene: 91788468
Following gene: 91788466
Centisome position: 52.62
GC content: 64.57
Gene sequence:
>1146_bases ATGATGATGCAGTCTTTTAGGCCCCTGGCCCAGATTTCTCGGCTGCCCTTGGCCATTTGTTTTGTAGCTCTGCTGGCTGG CTGCTTTGGCGGCGCCACCAAGCCCCAGCCGGCCGAACTGCAGCCGGTGACGGCCCTGGTATCCGCTCGCCAGAGCTGGA ACACCCGCATTGGGCAGGTCGATTTCCCTCTGGACGTGGCTGTTTCGGGCACCAGCGTTGCCATTGCGAGCGGCGACGGT ACGATCGCCCTTTTGGATGCTGCGACAGGCCGGGAGTTCTGGCGCGCGAGTCTCAATACGCCGGTTGCAGCAGGTGTGGG CAGCGACGGCAAGGTTTTGGCCGTGGTCACGAAGGCCAACGAGGTCGTTGCCCTGCAGGATGGGCGGGAAATCTGGCGCC AGAAACTCAATGCGCAAGCCTTCACCGCCCCTTTTGTAGCCGGTGCGCGGGTGTTCGTCCTGGCAGCGGACCGGTCGGTC ACTGCTTTTGATGGCCAGACGGGGCGCAAGCTGTGGGCGCAGCAACGACCCACCGAACCCCTGGTGCTGCGCCAGTCTGG CGTGATGCTGGCGGTTGGCGATACGCTGGTGGTGGGCCTCGCTGGCCGCCTTGCGGGCCTGAACCCCGCCAACGGCAGCA TTCGATGGGAGGCGCCCATTGCTTCGCCGCGCGGCATCAATGATGTGGAACGCCTGGTTGACCTGGTAGGGCGTGTCAGC CGGGACGGCGACAATGTCTGTGCGCGGGCCTTCCAGGCCAGCATTGGCTGCGTCAATGCCGCGCGCGGCAGCCTGTTGTG GGCCAAGCCGGCCAATGGCATGCAGGGTATTCATGGCGATGACCGCATGCTGTTTGGCACGGAAGCCGACGGGACGGTGA TCGCTTGGCGGCGCACCGATGGCGAGCGAAGCTGGACCACAGACCGCCTGCGTTATCGCAGCCTGACGGCACCCCTGATC GTGGGGCGTTCCGTGGCGATTGGCGACTTCAGCGGTTTTATCCATTTGCTGTCGCGGGAAGACGGCTCTCTCCTTAATCG CCTGCCGACCGACGGCTCGGCCATTGCCGCGGCTCCCGTGCTCGCCGGCAACACGCTGATCGCCGTGACCCACAACGGTG GGGTTTACGGTTTCAAGCCTGAGTAA
Upstream 100 bases:
>100_bases ACCGGCGCCTGGTGGAGGTCAAACTCAATGCGCTTGGCGTTGATCCCACCGCAGGTTCCACCAAACTGACAACGACCGCA GCCAATACCGAGGTGAAGAA
Downstream 100 bases:
>100_bases ACGAAATACACGAAATACAACCTTTCCAGAAGCTGATCGATGAAACCTGTCATTGCGTTAGTCGGCCGCCCGAATGTGGG CAAGTCGACGATTTTCAACC
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MMMQSFRPLAQISRLPLAICFVALLAGCFGGATKPQPAELQPVTALVSARQSWNTRIGQVDFPLDVAVSGTSVAIASGDG TIALLDAATGREFWRASLNTPVAAGVGSDGKVLAVVTKANEVVALQDGREIWRQKLNAQAFTAPFVAGARVFVLAADRSV TAFDGQTGRKLWAQQRPTEPLVLRQSGVMLAVGDTLVVGLAGRLAGLNPANGSIRWEAPIASPRGINDVERLVDLVGRVS RDGDNVCARAFQASIGCVNAARGSLLWAKPANGMQGIHGDDRMLFGTEADGTVIAWRRTDGERSWTTDRLRYRSLTAPLI VGRSVAIGDFSGFIHLLSREDGSLLNRLPTDGSAIAAAPVLAGNTLIAVTHNGGVYGFKPE
Sequences:
>Translated_381_residues MMMQSFRPLAQISRLPLAICFVALLAGCFGGATKPQPAELQPVTALVSARQSWNTRIGQVDFPLDVAVSGTSVAIASGDG TIALLDAATGREFWRASLNTPVAAGVGSDGKVLAVVTKANEVVALQDGREIWRQKLNAQAFTAPFVAGARVFVLAADRSV TAFDGQTGRKLWAQQRPTEPLVLRQSGVMLAVGDTLVVGLAGRLAGLNPANGSIRWEAPIASPRGINDVERLVDLVGRVS RDGDNVCARAFQASIGCVNAARGSLLWAKPANGMQGIHGDDRMLFGTEADGTVIAWRRTDGERSWTTDRLRYRSLTAPLI VGRSVAIGDFSGFIHLLSREDGSLLNRLPTDGSAIAAAPVLAGNTLIAVTHNGGVYGFKPE >Mature_381_residues MMMQSFRPLAQISRLPLAICFVALLAGCFGGATKPQPAELQPVTALVSARQSWNTRIGQVDFPLDVAVSGTSVAIASGDG TIALLDAATGREFWRASLNTPVAAGVGSDGKVLAVVTKANEVVALQDGREIWRQKLNAQAFTAPFVAGARVFVLAADRSV TAFDGQTGRKLWAQQRPTEPLVLRQSGVMLAVGDTLVVGLAGRLAGLNPANGSIRWEAPIASPRGINDVERLVDLVGRVS RDGDNVCARAFQASIGCVNAARGSLLWAKPANGMQGIHGDDRMLFGTEADGTVIAWRRTDGERSWTTDRLRYRSLTAPLI VGRSVAIGDFSGFIHLLSREDGSLLNRLPTDGSAIAAAPVLAGNTLIAVTHNGGVYGFKPE
Specific function: May play a role in a homeostatic control mechanism that coordinates the overall outer membrane assembly process [H]
COG id: COG1520
COG function: function code S; FOG: WD40-like repeat
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To R.prowazekii RP232 [H]
Homologues:
Organism=Escherichia coli, GI1788859, Length=375, Percent_Identity=23.7333333333333, Blast_Score=102, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017687 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 [H]
Pfam domain/function: PF01011 PQQ [H]
EC number: NA
Molecular weight: Translated: 40191; Mature: 40191
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMQSFRPLAQISRLPLAICFVALLAGCFGGATKPQPAELQPVTALVSARQSWNTRIGQV CCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE DFPLDVAVSGTSVAIASGDGTIALLDAATGREFWRASLNTPVAAGVGSDGKVLAVVTKAN CCCEEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHCCCCEEECCCCCCCEEEEEECCC EVVALQDGREIWRQKLNAQAFTAPFVAGARVFVLAADRSVTAFDGQTGRKLWAQQRPTEP EEEEECCCHHHHHHHCCCCCCCCHHHCCCEEEEEEECCEEEEECCCCCHHHHHHCCCCCC LVLRQSGVMLAVGDTLVVGLAGRLAGLNPANGSIRWEAPIASPRGINDVERLVDLVGRVS EEEECCCEEEEECCEEEEEHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC RDGDNVCARAFQASIGCVNAARGSLLWAKPANGMQGIHGDDRMLFGTEADGTVIAWRRTD CCCHHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECC GERSWTTDRLRYRSLTAPLIVGRSVAIGDFSGFIHLLSREDGSLLNRLPTDGSAIAAAPV CCCCCCHHHHHHHCCCCCEEECCEEEEECHHHHHEEEECCCCHHHHHCCCCCCCEEECCE LAGNTLIAVTHNGGVYGFKPE EECCEEEEEEECCCEEECCCC >Mature Secondary Structure MMMQSFRPLAQISRLPLAICFVALLAGCFGGATKPQPAELQPVTALVSARQSWNTRIGQV CCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE DFPLDVAVSGTSVAIASGDGTIALLDAATGREFWRASLNTPVAAGVGSDGKVLAVVTKAN CCCEEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHCCCCEEECCCCCCCEEEEEECCC EVVALQDGREIWRQKLNAQAFTAPFVAGARVFVLAADRSVTAFDGQTGRKLWAQQRPTEP EEEEECCCHHHHHHHCCCCCCCCHHHCCCEEEEEEECCEEEEECCCCCHHHHHHCCCCCC LVLRQSGVMLAVGDTLVVGLAGRLAGLNPANGSIRWEAPIASPRGINDVERLVDLVGRVS EEEECCCEEEEECCEEEEEHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC RDGDNVCARAFQASIGCVNAARGSLLWAKPANGMQGIHGDDRMLFGTEADGTVIAWRRTD CCCHHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECC GERSWTTDRLRYRSLTAPLIVGRSVAIGDFSGFIHLLSREDGSLLNRLPTDGSAIAAAPV CCCCCCHHHHHHHCCCCCEEECCEEEEECHHHHHEEEECCCCHHHHHCCCCCCCEEECCE LAGNTLIAVTHNGGVYGFKPE EECCEEEEEEECCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]