| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is glnD [H]
Identifier: 91788450
GI number: 91788450
Start: 2712842
End: 2715433
Strand: Direct
Name: glnD [H]
Synonym: Bpro_2588
Alternate gene names: 91788450
Gene position: 2712842-2715433 (Clockwise)
Preceding gene: 91788449
Following gene: 91788478
Centisome position: 52.17
GC content: 62.54
Gene sequence:
>2592_bases ATGAGTGAACTGGTTCAGGTGCGGGAGCAATACCGTGCGGGTAAAACCGCCCTGCTCGCCTCGCTGGCCGGCAGCGGCGC CTCGTCCCGGGGCATTCACAGCCTGCTGCAAAAGCTGGCCAAGCATACCGATGCAACCTTGCAGCTGCTCTGGCAGCGTG CCGGCTTCCCGGCCACGGCCTGCCTGGTTGCGGCGGGTGGTTTTGGCCGGGGCGAGCTGTTTCCCCATTCAGACGTGGAC GTCCTGCTTTTGCTGCCGGACGACGCCAATGCGGAGGACGATGCGCCCCTCAAAAGCAAGGTGGAGAGCTTCATCAGCAG TTGCTGGGACAGCGGACTGGAAATCGGTTCCAGCGTGCGCACGGTGGCCGACTGCGTGGAAGAGGCAGCCAAGGATGTCA CCGTGCAGACCTCCCTGCTGGAAGCTCGACGGGTTGCCGGCTCGAAAAAGAATTTTCTGAGGCTGCAACAGCAGCTCGAC GCGGTGCTCGACCCCAAGGCCTTTTATGTGGCCAAAACGCTGGAATTGCGCCAGCGCCATAACAAGTTTGAAAACACGCC CTACTCCCTGGAGCCCAATTGCAAGGAATCGCCGGGAGGCTTGCGGGATCTGCAGGTGGTGTTGTGGGTCGCGCGCGCCG CGGGTCTCGGAAAATCGTGGGATGACCTCGCTCGTAGCGGCCTCGCCACCGCCTTTGAGGTGCGGCAGATCAAGGCCAAT GAGGCGCTGCTGAGCCTGATACGCGCCCGCCTGCACCTGATTTCAGGGCGGCGCGAGGACCGGCTTGTATTCGATCTGCA AACGGCTGTCGCCGAGTCGTTCGGCTATTCAAGCCATGCCGATGATGGCAGCAGGCTGCCGCGCCGTGCCAGTGAAGCAT TGATGCGCCGCTACTATTGGGCCGCCAAGGCGGTGACCCAGCTCAACCAGATCCTGCTGCTCAACATTGAAGAACGCCTG AACCCCAACACCTATCCGCTGCAGCGGATCAATGAACGGTTCTGCGACAAGGCGGGCATGCTGGAAGTGACCAGCGATGA CCTGTACGTGCGCGAGCCGCATGCGATTCTTGAAACCTTCCTGCTGTACGAAACCACCGTAGGCATCAAGGGGCTGTCGG CGCGCACCCTGCGGGCGCTGTACAACGCCCGTGGCGTCATGACAGCGAAGTTCCGCCGCGACCCCGTCAATCGGGACACC TTCCGGCGCATCCTGCAGCAGCCCGAGGGCATCACGCACGCCATACGCCTGATGAACCAGACCTCGGTGCTGGGCCGTTA CTTGTGGGTATTCCGCAAGATCGTCGGGCAGATGCAGCATGACCTGTTCCACGTGTATACCGTGGACCAGCACATCCTCA TGGTGCTGCGCAATGTGCGGCGCTTCTTCATGGCCGAGCACTCGCATGAATACCCGATGTGCTCACAACTCGCGGCGGGT TGGGACAAGCCCTGGATATTGTTCATTGCGGCGCTGTTTCATGACATTGCCAAGGGACGCGGCGGCGATCATTCCGAACT GGGCTGCAAGGATGTTCGCATTTTCTGCCGGCAGCACGGCATCGCCACCGGGGACGCCCGCCTGATCGAGTTCCTGGTGG GCGAGCACCTGAGCATGAGCCGGATCGCCCAAAAGGAAGACCTCAGCAATCCCGACGTGATTGCCGCCTTTGCCCGGCGG GTCGGCAATGAGCGCTACCTGACCGCCCTGTACCTGCTGACGGTGGCCGATATCCGCGGTACCAGCCCCAAAGTCTGGAA CGCCTGGAAAGGCAAGCTGCTGGAAGACCTCTACCGCTACACGCTGCGCGTGCTGGGCGGGCGGGCACCCGATGCCGATG CCGAAGTGGAGGCCCGAAAGCGCGAGGCCCTGACCACGCTGGCGCTGCACGCCGAACCATTCGAGGCCCACAAGGCACTG TGGGATACGCTGGACGTGAGTTACTTCATGCGCCATGAGGCGGCCGACATTGCCTGGCACGCCCGGCAGCTGTCGCGCTA CGTGGGCAAGGCCAAGATCATCGTGCGTGCGCGCCGCTCGTCGGCCGGCGAAGGCATGCAGGTGCTGGTCTACACGCCTG ACGCGCCGGACCTGTTCGCGCGCATTTGCGGTTACTTTGACCAGGCAGGTTTCAGCATTCTGGATGCCAAGATTCACACT GCCAAAAACGGTTACGCGCTCGACACCTTTCAGGTAGTCAGTCCCGAGCTGGCTGACCATTATCGCGAGCTGGCCGCCAT GGTCGAGGCCGACCTGGACCGCACCATTGAAGAGCCGGGCCCGCTGCCTCCTCCCGGCAAGGGCCGCGTGTCACGCCGCG TCAAAAGCTTTCCGATTGCACCACGGGTGGATCTGCAGCCGGACGAAAAAGCCCAGCGCTGGCTGCTCAGCGTATCGGCC AGCGACCGCGCCGGCCTGCTGTACCTGATTGCGCGGGTCCTGGCCCGCCACCGCATCAACCTGCAGCTTGCCAAGATCAC CACACTGGGTGAGCGTGTGGAAGACACCTTCCTGATCGATGGCCCCGAACTTCAGCAGAACAAGGCGCAAATCGCCATTG AGACCGAATTGCTGGAAGCGCTCAATACCTGA
Upstream 100 bases:
>100_bases ACTTTGTTGCCCAAAACAATCCGGCGCAGGTCCTGGTCAGCGCCTGATCCGGTTGCTTTCAGTGCCGTCCTGCGCACCTT GATGCCCCCGCTCCCTACCC
Downstream 100 bases:
>100_bases CGTGGCGGCTTCCGGAATTTCGCCCCCAGGCACTTCCGCCTGCACGCTTCAGAGATGTAAAGCGGTGGAAGTCCTCAGGT AGCGCAGCAATCGCCCCTTG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 863; Mature: 862
Protein sequence:
>863_residues MSELVQVREQYRAGKTALLASLAGSGASSRGIHSLLQKLAKHTDATLQLLWQRAGFPATACLVAAGGFGRGELFPHSDVD VLLLLPDDANAEDDAPLKSKVESFISSCWDSGLEIGSSVRTVADCVEEAAKDVTVQTSLLEARRVAGSKKNFLRLQQQLD AVLDPKAFYVAKTLELRQRHNKFENTPYSLEPNCKESPGGLRDLQVVLWVARAAGLGKSWDDLARSGLATAFEVRQIKAN EALLSLIRARLHLISGRREDRLVFDLQTAVAESFGYSSHADDGSRLPRRASEALMRRYYWAAKAVTQLNQILLLNIEERL NPNTYPLQRINERFCDKAGMLEVTSDDLYVREPHAILETFLLYETTVGIKGLSARTLRALYNARGVMTAKFRRDPVNRDT FRRILQQPEGITHAIRLMNQTSVLGRYLWVFRKIVGQMQHDLFHVYTVDQHILMVLRNVRRFFMAEHSHEYPMCSQLAAG WDKPWILFIAALFHDIAKGRGGDHSELGCKDVRIFCRQHGIATGDARLIEFLVGEHLSMSRIAQKEDLSNPDVIAAFARR VGNERYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRYTLRVLGGRAPDADAEVEARKREALTTLALHAEPFEAHKAL WDTLDVSYFMRHEAADIAWHARQLSRYVGKAKIIVRARRSSAGEGMQVLVYTPDAPDLFARICGYFDQAGFSILDAKIHT AKNGYALDTFQVVSPELADHYRELAAMVEADLDRTIEEPGPLPPPGKGRVSRRVKSFPIAPRVDLQPDEKAQRWLLSVSA SDRAGLLYLIARVLARHRINLQLAKITTLGERVEDTFLIDGPELQQNKAQIAIETELLEALNT
Sequences:
>Translated_863_residues MSELVQVREQYRAGKTALLASLAGSGASSRGIHSLLQKLAKHTDATLQLLWQRAGFPATACLVAAGGFGRGELFPHSDVD VLLLLPDDANAEDDAPLKSKVESFISSCWDSGLEIGSSVRTVADCVEEAAKDVTVQTSLLEARRVAGSKKNFLRLQQQLD AVLDPKAFYVAKTLELRQRHNKFENTPYSLEPNCKESPGGLRDLQVVLWVARAAGLGKSWDDLARSGLATAFEVRQIKAN EALLSLIRARLHLISGRREDRLVFDLQTAVAESFGYSSHADDGSRLPRRASEALMRRYYWAAKAVTQLNQILLLNIEERL NPNTYPLQRINERFCDKAGMLEVTSDDLYVREPHAILETFLLYETTVGIKGLSARTLRALYNARGVMTAKFRRDPVNRDT FRRILQQPEGITHAIRLMNQTSVLGRYLWVFRKIVGQMQHDLFHVYTVDQHILMVLRNVRRFFMAEHSHEYPMCSQLAAG WDKPWILFIAALFHDIAKGRGGDHSELGCKDVRIFCRQHGIATGDARLIEFLVGEHLSMSRIAQKEDLSNPDVIAAFARR VGNERYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRYTLRVLGGRAPDADAEVEARKREALTTLALHAEPFEAHKAL WDTLDVSYFMRHEAADIAWHARQLSRYVGKAKIIVRARRSSAGEGMQVLVYTPDAPDLFARICGYFDQAGFSILDAKIHT AKNGYALDTFQVVSPELADHYRELAAMVEADLDRTIEEPGPLPPPGKGRVSRRVKSFPIAPRVDLQPDEKAQRWLLSVSA SDRAGLLYLIARVLARHRINLQLAKITTLGERVEDTFLIDGPELQQNKAQIAIETELLEALNT >Mature_862_residues SELVQVREQYRAGKTALLASLAGSGASSRGIHSLLQKLAKHTDATLQLLWQRAGFPATACLVAAGGFGRGELFPHSDVDV LLLLPDDANAEDDAPLKSKVESFISSCWDSGLEIGSSVRTVADCVEEAAKDVTVQTSLLEARRVAGSKKNFLRLQQQLDA VLDPKAFYVAKTLELRQRHNKFENTPYSLEPNCKESPGGLRDLQVVLWVARAAGLGKSWDDLARSGLATAFEVRQIKANE ALLSLIRARLHLISGRREDRLVFDLQTAVAESFGYSSHADDGSRLPRRASEALMRRYYWAAKAVTQLNQILLLNIEERLN PNTYPLQRINERFCDKAGMLEVTSDDLYVREPHAILETFLLYETTVGIKGLSARTLRALYNARGVMTAKFRRDPVNRDTF RRILQQPEGITHAIRLMNQTSVLGRYLWVFRKIVGQMQHDLFHVYTVDQHILMVLRNVRRFFMAEHSHEYPMCSQLAAGW DKPWILFIAALFHDIAKGRGGDHSELGCKDVRIFCRQHGIATGDARLIEFLVGEHLSMSRIAQKEDLSNPDVIAAFARRV GNERYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRYTLRVLGGRAPDADAEVEARKREALTTLALHAEPFEAHKALW DTLDVSYFMRHEAADIAWHARQLSRYVGKAKIIVRARRSSAGEGMQVLVYTPDAPDLFARICGYFDQAGFSILDAKIHTA KNGYALDTFQVVSPELADHYRELAAMVEADLDRTIEEPGPLPPPGKGRVSRRVKSFPIAPRVDLQPDEKAQRWLLSVSAS DRAGLLYLIARVLARHRINLQLAKITTLGERVEDTFLIDGPELQQNKAQIAIETELLEALNT
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=843, Percent_Identity=35.5871886120996, Blast_Score=494, Evalue=1e-140,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 96858; Mature: 96727
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELVQVREQYRAGKTALLASLAGSGASSRGIHSLLQKLAKHTDATLQLLWQRAGFPATA CCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHH CLVAAGGFGRGELFPHSDVDVLLLLPDDANAEDDAPLKSKVESFISSCWDSGLEIGSSVR HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHH TVADCVEEAAKDVTVQTSLLEARRVAGSKKNFLRLQQQLDAVLDPKAFYVAKTLELRQRH HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH NKFENTPYSLEPNCKESPGGLRDLQVVLWVARAAGLGKSWDDLARSGLATAFEVRQIKAN HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH EALLSLIRARLHLISGRREDRLVFDLQTAVAESFGYSSHADDGSRLPRRASEALMRRYYW HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCCCHHCHHHHHHHHHHHHHH AAKAVTQLNQILLLNIEERLNPNTYPLQRINERFCDKAGMLEVTSDDLYVREPHAILETF HHHHHHHHHHHEEEEEHHHCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEECHHHHHHHH LLYETTVGIKGLSARTLRALYNARGVMTAKFRRDPVNRDTFRRILQQPEGITHAIRLMNQ HHHHHHCCCCCCHHHHHHHHHHCCCCEEEHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH TSVLGRYLWVFRKIVGQMQHDLFHVYTVDQHILMVLRNVRRFFMAEHSHEYPMCSQLAAG HHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC WDKPWILFIAALFHDIAKGRGGDHSELGCKDVRIFCRQHGIATGDARLIEFLVGEHLSMS CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHH RIAQKEDLSNPDVIAAFARRVGNERYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRY HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH TLRVLGGRAPDADAEVEARKREALTTLALHAEPFEAHKALWDTLDVSYFMRHEAADIAWH HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQLSRYVGKAKIIVRARRSSAGEGMQVLVYTPDAPDLFARICGYFDQAGFSILDAKIHT HHHHHHHHCHHHEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHEE AKNGYALDTFQVVSPELADHYRELAAMVEADLDRTIEEPGPLPPPGKGRVSRRVKSFPIA CCCCCEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC PRVDLQPDEKAQRWLLSVSASDRAGLLYLIARVLARHRINLQLAKITTLGERVEDTFLID CCCCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCEEEC GPELQQNKAQIAIETELLEALNT CCCCCCCCHHEEHHHHHHHHHCC >Mature Secondary Structure SELVQVREQYRAGKTALLASLAGSGASSRGIHSLLQKLAKHTDATLQLLWQRAGFPATA CHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHH CLVAAGGFGRGELFPHSDVDVLLLLPDDANAEDDAPLKSKVESFISSCWDSGLEIGSSVR HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHH TVADCVEEAAKDVTVQTSLLEARRVAGSKKNFLRLQQQLDAVLDPKAFYVAKTLELRQRH HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH NKFENTPYSLEPNCKESPGGLRDLQVVLWVARAAGLGKSWDDLARSGLATAFEVRQIKAN HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH EALLSLIRARLHLISGRREDRLVFDLQTAVAESFGYSSHADDGSRLPRRASEALMRRYYW HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCCCHHCHHHHHHHHHHHHHH AAKAVTQLNQILLLNIEERLNPNTYPLQRINERFCDKAGMLEVTSDDLYVREPHAILETF HHHHHHHHHHHEEEEEHHHCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEECHHHHHHHH LLYETTVGIKGLSARTLRALYNARGVMTAKFRRDPVNRDTFRRILQQPEGITHAIRLMNQ HHHHHHCCCCCCHHHHHHHHHHCCCCEEEHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH TSVLGRYLWVFRKIVGQMQHDLFHVYTVDQHILMVLRNVRRFFMAEHSHEYPMCSQLAAG HHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC WDKPWILFIAALFHDIAKGRGGDHSELGCKDVRIFCRQHGIATGDARLIEFLVGEHLSMS CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHH RIAQKEDLSNPDVIAAFARRVGNERYLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRY HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH TLRVLGGRAPDADAEVEARKREALTTLALHAEPFEAHKALWDTLDVSYFMRHEAADIAWH HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQLSRYVGKAKIIVRARRSSAGEGMQVLVYTPDAPDLFARICGYFDQAGFSILDAKIHT HHHHHHHHCHHHEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHEE AKNGYALDTFQVVSPELADHYRELAAMVEADLDRTIEEPGPLPPPGKGRVSRRVKSFPIA CCCCCEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC PRVDLQPDEKAQRWLLSVSASDRAGLLYLIARVLARHRINLQLAKITTLGERVEDTFLID CCCCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCEEEC GPELQQNKAQIAIETELLEALNT CCCCCCCCHHEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA