| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is map [H]
Identifier: 91788449
GI number: 91788449
Start: 2711934
End: 2712788
Strand: Direct
Name: map [H]
Synonym: Bpro_2587
Alternate gene names: 91788449
Gene position: 2711934-2712788 (Clockwise)
Preceding gene: 91788447
Following gene: 91788450
Centisome position: 52.15
GC content: 60.58
Gene sequence:
>855_bases ATGAGTATTACGTATAAAGATGCTGCGGGCATAGAGGGCATGCGTTTGGCCGGCAGGCTGGCGTCCGAGGTGCTGGACTA CCTCACGCCCTTCGTCAAACCAGGCGTGACGACCAATGAAATCGACCGGCTGGCCCATGACTACATGACCCAGGTCCAGG GCACCATTCCCGCGACCCTGGGCTACGGCCCCCCCGGCTACGTGCCCTACCCCAAATCGCTGTGCACCTCGGTCAACCAC CAAGTGTGCCACGGCATCCCCAACGACAAGCCCCTGAAAAAAGGCGACATCGTCAACATCGATGTGACCGTCATCACCAA GGACGGCTGGCACGGAGACAACAGCCGCATGTACCTGATCGGCGAAGCGTCGATTGCGGCCAAACGGCTGTGCAAGGTCA CCTACGAGGCCATGTGGCAGGGCATCATGCGCGTCAAACCGGGTGTGCGTCTGGGTGACATCGGGTTTGCCATCCAGGCC TATGCAGAAAAACAGGGGTTTTCCGTCGTGCGCGAATTCTGCGGCCACGGCGTCGGCCAGAAGTTCCATGAAGAGCCGCA GGTGCTGCACTATGGCCGCCCCGGCACGCTGGAAGAACTCAAGCCGGGCATGACGTTCACCATCGAACCCATGATCAATG CCGGCAAGCGCGATATCAAGGACGGCCCGGAAAAAGACGGCTGGAGCATCGTGACACGAGACCATTCGCTGTCAGCCCAG TGGGAGCACACCATCCTTGTTTCCGAGACCGGTTACGAGGTGCTGACCGTCTCGGCGGGCAGCCCGGCCATTCCCGCATT TGTCGCAGACTTTGTTGCCCAAAACAATCCGGCGCAGGTCCTGGTCAGCGCCTGA
Upstream 100 bases:
>100_bases CCCTCCTTTACCGTTCACTTTGTCTCGCCACATTTCCCCTTCAATTCCGCAAAAATACCCATGCATACCCATGACATGGA CCAGTGGGATAATCGGAAAT
Downstream 100 bases:
>100_bases TCCGGTTGCTTTCAGTGCCGTCCTGCGCACCTTGATGCCCCCGCTCCCTACCCATGAGTGAACTGGTTCAGGTGCGGGAG CAATACCGTGCGGGTAAAAC
Product: methionine aminopeptidase
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MSITYKDAAGIEGMRLAGRLASEVLDYLTPFVKPGVTTNEIDRLAHDYMTQVQGTIPATLGYGPPGYVPYPKSLCTSVNH QVCHGIPNDKPLKKGDIVNIDVTVITKDGWHGDNSRMYLIGEASIAAKRLCKVTYEAMWQGIMRVKPGVRLGDIGFAIQA YAEKQGFSVVREFCGHGVGQKFHEEPQVLHYGRPGTLEELKPGMTFTIEPMINAGKRDIKDGPEKDGWSIVTRDHSLSAQ WEHTILVSETGYEVLTVSAGSPAIPAFVADFVAQNNPAQVLVSA
Sequences:
>Translated_284_residues MSITYKDAAGIEGMRLAGRLASEVLDYLTPFVKPGVTTNEIDRLAHDYMTQVQGTIPATLGYGPPGYVPYPKSLCTSVNH QVCHGIPNDKPLKKGDIVNIDVTVITKDGWHGDNSRMYLIGEASIAAKRLCKVTYEAMWQGIMRVKPGVRLGDIGFAIQA YAEKQGFSVVREFCGHGVGQKFHEEPQVLHYGRPGTLEELKPGMTFTIEPMINAGKRDIKDGPEKDGWSIVTRDHSLSAQ WEHTILVSETGYEVLTVSAGSPAIPAFVADFVAQNNPAQVLVSA >Mature_283_residues SITYKDAAGIEGMRLAGRLASEVLDYLTPFVKPGVTTNEIDRLAHDYMTQVQGTIPATLGYGPPGYVPYPKSLCTSVNHQ VCHGIPNDKPLKKGDIVNIDVTVITKDGWHGDNSRMYLIGEASIAAKRLCKVTYEAMWQGIMRVKPGVRLGDIGFAIQAY AEKQGFSVVREFCGHGVGQKFHEEPQVLHYGRPGTLEELKPGMTFTIEPMINAGKRDIKDGPEKDGWSIVTRDHSLSAQW EHTILVSETGYEVLTVSAGSPAIPAFVADFVAQNNPAQVLVSA
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=261, Percent_Identity=47.1264367816092, Blast_Score=234, Evalue=8e-62, Organism=Homo sapiens, GI40385867, Length=255, Percent_Identity=38.8235294117647, Blast_Score=179, Evalue=3e-45, Organism=Escherichia coli, GI1786364, Length=270, Percent_Identity=55.1851851851852, Blast_Score=306, Evalue=1e-84, Organism=Caenorhabditis elegans, GI71996291, Length=251, Percent_Identity=44.2231075697211, Blast_Score=208, Evalue=2e-54, Organism=Saccharomyces cerevisiae, GI6323273, Length=257, Percent_Identity=43.1906614785992, Blast_Score=194, Evalue=9e-51, Organism=Drosophila melanogaster, GI21355531, Length=262, Percent_Identity=44.6564885496183, Blast_Score=219, Evalue=2e-57, Organism=Drosophila melanogaster, GI24583427, Length=253, Percent_Identity=40.3162055335968, Blast_Score=190, Evalue=8e-49,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 30986; Mature: 30855
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITYKDAAGIEGMRLAGRLASEVLDYLTPFVKPGVTTNEIDRLAHDYMTQVQGTIPATL CCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEE GYGPPGYVPYPKSLCTSVNHQVCHGIPNDKPLKKGDIVNIDVTVITKDGWHGDNSRMYLI CCCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEE GEASIAAKRLCKVTYEAMWQGIMRVKPGVRLGDIGFAIQAYAEKQGFSVVREFCGHGVGQ ECHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCH KFHEEPQVLHYGRPGTLEELKPGMTFTIEPMINAGKRDIKDGPEKDGWSIVTRDHSLSAQ HHCCCCCEEECCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC WEHTILVSETGYEVLTVSAGSPAIPAFVADFVAQNNPAQVLVSA EEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEC >Mature Secondary Structure SITYKDAAGIEGMRLAGRLASEVLDYLTPFVKPGVTTNEIDRLAHDYMTQVQGTIPATL CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEE GYGPPGYVPYPKSLCTSVNHQVCHGIPNDKPLKKGDIVNIDVTVITKDGWHGDNSRMYLI CCCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEE GEASIAAKRLCKVTYEAMWQGIMRVKPGVRLGDIGFAIQAYAEKQGFSVVREFCGHGVGQ ECHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCH KFHEEPQVLHYGRPGTLEELKPGMTFTIEPMINAGKRDIKDGPEKDGWSIVTRDHSLSAQ HHCCCCCEEECCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC WEHTILVSETGYEVLTVSAGSPAIPAFVADFVAQNNPAQVLVSA EEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]