| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is surA [C]
Identifier: 91788447
GI number: 91788447
Start: 2706486
End: 2707271
Strand: Direct
Name: surA [C]
Synonym: Bpro_2585
Alternate gene names: 91788447
Gene position: 2706486-2707271 (Clockwise)
Preceding gene: 91788446
Following gene: 91788449
Centisome position: 52.05
GC content: 57.76
Gene sequence:
>786_bases ATGAAAAAGCAATTTTTACTGGCTACCGCCGTTGCAGGGCTGCTGGCCATGGGCGCGCAAGGCGCTTTCGCGCAGAACGT CGCCATCGTCAACGGCAAGGCAGTGCCCAAGGCGCGCCTTGATTCGCTGGCCCAGCAAATTGCCCGCTCCGGCCGTCCGG TGACCCCCGATATGGAAAACCAGCTGCGCGAAGAAGTCATTGCGCGTGAGGTGTTCATGCAGGAAGCCGAAAAACAGGGG CTGTCCGGCACCGACGACTTCAAGGTACAGATGGAACTGGCGCGCCAGACCATCCTGATCCGCGAACTGTTCGCGGACTA TCAAAAGAAAAACCCGGTGACCGATGCTGATTTGAAAGGCGAGTACGACAAATTCGCCGCGGCCAACGGCGGCAAGGAGT ACAAGGCCCGCCATATCCTGGTCGAGAAGGAAGCCGAGGCCAAGGCCATCATTGCCAGCCTGAAAAAAGGCGGCAAGTTT GAGGACATCGCGAAGAAACAGTCCAAGGATCCAGGCTCAGGAGCCAAGGGTGGTGACCTCGACTGGGCCAATCCGTCGGG GTATGTACCTGAGTTCAGCGAAGCGCTGCTCAAGCTCAACAAAGGACAGCTGACCGATGCGCCGGTGAAGTCGCAGTTTG GCTACCATGTGATCCGCGTGGACGACATCCGCAATGCCCAGCTGCCTTCGTTTGAAGAGGTCAAGCCGCAAATCGCCCAG CAAATGCAGCAGCAGAAGCTCGCCACCTTCCAGGAAGACCTGCGCAAAAAAGCGAAGATCGAATAA
Upstream 100 bases:
>100_bases AACCCCGGTGGATGTGCTGTAAAGCCCGTAACCGCCGGCAATCAACTCCGCCCAAGATCCCAACCATTCACCAAGCGTCA TCAAGGATTACCAACTCATC
Downstream 100 bases:
>100_bases GCGTCAGTTGACGCTCCGGCGCGTTGTTCGCCATCTAAAAAAAACGCGGCTCAAGGCCGCGTTTTTTTGTTTCACCACAC CATTACCCGACCCAGCGGCG
Product: PpiC-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: PPIase; Rotamase [H]
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MKKQFLLATAVAGLLAMGAQGAFAQNVAIVNGKAVPKARLDSLAQQIARSGRPVTPDMENQLREEVIAREVFMQEAEKQG LSGTDDFKVQMELARQTILIRELFADYQKKNPVTDADLKGEYDKFAAANGGKEYKARHILVEKEAEAKAIIASLKKGGKF EDIAKKQSKDPGSGAKGGDLDWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQ QMQQQKLATFQEDLRKKAKIE
Sequences:
>Translated_261_residues MKKQFLLATAVAGLLAMGAQGAFAQNVAIVNGKAVPKARLDSLAQQIARSGRPVTPDMENQLREEVIAREVFMQEAEKQG LSGTDDFKVQMELARQTILIRELFADYQKKNPVTDADLKGEYDKFAAANGGKEYKARHILVEKEAEAKAIIASLKKGGKF EDIAKKQSKDPGSGAKGGDLDWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQ QMQQQKLATFQEDLRKKAKIE >Mature_261_residues MKKQFLLATAVAGLLAMGAQGAFAQNVAIVNGKAVPKARLDSLAQQIARSGRPVTPDMENQLREEVIAREVFMQEAEKQG LSGTDDFKVQMELARQTILIRELFADYQKKNPVTDADLKGEYDKFAAANGGKEYKARHILVEKEAEAKAIIASLKKGGKF EDIAKKQSKDPGSGAKGGDLDWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQ QMQQQKLATFQEDLRKKAKIE
Specific function: Assist In The Folding Of Extracytoplasmic Proteins. Essential For The Survival Of E.Coli In Stationary Phase. [C]
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PpiC domain [H]
Homologues:
Organism=Homo sapiens, GI38679892, Length=98, Percent_Identity=38.7755102040816, Blast_Score=68, Evalue=7e-12, Organism=Escherichia coli, GI1786238, Length=119, Percent_Identity=42.8571428571429, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786645, Length=137, Percent_Identity=35.7664233576642, Blast_Score=79, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17537235, Length=100, Percent_Identity=41, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000297 - InterPro: IPR023058 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 28789; Mature: 28789
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQFLLATAVAGLLAMGAQGAFAQNVAIVNGKAVPKARLDSLAQQIARSGRPVTPDMEN CCCHHHHHHHHHHHHHHCCCCCHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHH QLREEVIAREVFMQEAEKQGLSGTDDFKVQMELARQTILIRELFADYQKKNPVTDADLKG HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC EYDKFAAANGGKEYKARHILVEKEAEAKAIIASLKKGGKFEDIAKKQSKDPGSGAKGGDL CHHHHHHCCCCCHHHHHHEEEECCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCC DWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQ CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH QMQQQKLATFQEDLRKKAKIE HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKQFLLATAVAGLLAMGAQGAFAQNVAIVNGKAVPKARLDSLAQQIARSGRPVTPDMEN CCCHHHHHHHHHHHHHHCCCCCHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHH QLREEVIAREVFMQEAEKQGLSGTDDFKVQMELARQTILIRELFADYQKKNPVTDADLKG HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC EYDKFAAANGGKEYKARHILVEKEAEAKAIIASLKKGGKFEDIAKKQSKDPGSGAKGGDL CHHHHHHCCCCCHHHHHHEEEECCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCC DWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQ CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH QMQQQKLATFQEDLRKKAKIE HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]