| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fadJ [H]
Identifier: 91788435
GI number: 91788435
Start: 2692989
End: 2695088
Strand: Reverse
Name: fadJ [H]
Synonym: Bpro_2573
Alternate gene names: 91788435
Gene position: 2695088-2692989 (Counterclockwise)
Preceding gene: 91788436
Following gene: 91788434
Centisome position: 51.83
GC content: 60.0
Gene sequence:
>2100_bases ATGACAACCCATTACGAAGTTCGCGGCACGGTGGCGCTGATCACACTGGACAACCCGCCCGTCAACGGCCTCGGTTATGC CACCCGTTCCAGCATTACCGACAACCTGCAAAAAGCCAACGCCGACGCGGCCGTCAAATCCATTGTGCTGACCGGCGCAG GCAAGGCCTTTTCAGGCGGTGCCGACATCAAGGAGTTCGGCACCCCAAAAGCGCTCCTGGAACCCAACCTGCTCAGCGTG ATTCGCGCGGTTGAAAATTCCTCCAAACCGGTGGTGGCGGCCATCCACACGGTCTGCATGGGCGGCGGACTGGAGCTGGC CCTGGGCTGTCACTACCGCATCGCGGCACCTGGCTGCAGCGTGGCATTGCCCGAGGTCAAGCTGGGTCTGTTGCCTGGCG CAGGAGGTACCCAGCGTCTGCCGCGCACAGTGGGTGTCGAGCCCGCATTGAACATGATCGTGAGCGGAGAGCCCGTCAAG AGCGAATTGCTGGCGCAGATTCCGGGGCAGAAGCTGTTTGACAGGATGGCCGCCTCGCCGGAGTCGCTGGCAGAAGACGC GCTGGCCTTTGCCCAGTCTATTGCCGACACCCGCCCGCTGCCGCTGGTGCGCAACCTGCCATGCAAGCATCCCGATGGCG ATGCCTACTTCCAGTTCGCCCGCAACATGGTCAAGGGCATGGCGAAGAATTTCCCCGCTCCGCTCAAATGCGTGGATGCC GTGGAAGCTGCCACCAAAAAGAAATTTGAAGACGGGCTGGCGTTTGAGCGCGAGCTCTTCATCAACCTGATGTGGACACC TGAAAGCCGCGCGCTGCGCCACATTTTCATGGCCGAGCGTGCCGCCTCCAAGATTCCTGATGTGCCGGAAGATACGCCCA GGCGCGAGATCAAATCGATTGCTGTGATCGGTGCCGGGACCATGGGCGGCGGCATCTCCATGAATTTCCTGAACGCCGGC ATCCCGGTCAAGATCCTGGAAATGAAGCAGGAAGCGCTGGACCGTGGCATTGCCACCATCCGCAAAAATTACGAATCGCA GGTCAAAAAAGGCAAGCTCAAGCAGGACAAGTACGAGCAGCGCATGAGCCTGCTCAGCACCACCTTGAGCTACGACGACC TGAAAGACGCCGACATGGTGATCGAGGCCGTCTTTGAGGAAATGGGCGTCAAGGAAAAGGTTTTAAAGGAGCTGGACCGC GTGATGAAGCCGGGCGCCATTTTGGCATCCAACACATCCACGCTCGACATGAACCAGATCGCCAGTTTCACCAAGCGTCC GCAAGACGTCATCGGCACCCACTTTTTCAGCCCGGCCAACGTCATGAAGCTGCTGGAAGTAGTGCGCGGGGAAAAAACGG CCAAGGATGTGCTGGCCACCGTCATGGCGTTGGGCAAGAAGATCAAAAAGACCGCAGTCGTATCCGGCGTTTGTGACGGC TTCATTGGCAACCGCATGATCGAGCAATACAGCCGCCAGGCTGGCTTCCTGCTGGAAGAGGGCGCAACGCCGGCGCAGGT CGACAAGGCCGTGGAGAAGTTCGGCTTTGCCATGGGCCCCTTCCGCATGGGCGACCTGGCGGGCAACGACATTGGCTGGG CGATCCGCAAGCGCCGCTACCAGGAAAAGCCGGGCATGAAGTACAGCAAGACCGCTGATTTACTCTGCGAAATGGGGCGC TACGGCCAGAAAACCGGCGCAGGCTGGTACGACTATGTGCCCGGCAAGCGCGACGCGATCCCCTCGCAGGTGGTTGTTGA CATGATCGAAAAGCACCGCAAGGACATCGGCGTGACGCCGCGCAGGATTTCCGATGAGGAAATCGTCGAGCGCCTCGTCT ATTCGCTGGTCAATGAAGCCGCGCACATTCTCGAGGAAGGCATTGCCTCCAAAGCCAGCGATATCGACATGGTCTACCTG ACCGGCTACGGCTTCCCCCTGCACCGCGGCGGCCCGATGCTGTACGCCGATCAGATGGGCCTCTTCAACGTGGTGCAGAG CATGAATCGCTTTGCCCAGAACCCGCTGGATGATGCAAGTTTCTGGAAGCCCGCCCCATTGCTGGCCCGGCTCGCAGCCG AAGGCAAGACTTTCAACTAA
Upstream 100 bases:
>100_bases CCTACAATAAGAAAAAGAACGGTCGTACTATTTTTCTGGCGGGGTGCTTAACCCCCGAGGCCGAAACAACTGAAACTTCA CTCAAGGAAAGACAACGGCA
Downstream 100 bases:
>100_bases TTTGAGAACAAATTCCGGAGATTCCCATGACCTCAGCCGTAATAGTTTCCACCGCCCGCACCCCCCTGGCCAAAAGCTGG AAGGGCTCTTTCAACATGAC
Product: 3-hydroxyacyl-CoA dehydrogenase/short chain enoyl-CoA hydratase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 699; Mature: 698
Protein sequence:
>699_residues MTTHYEVRGTVALITLDNPPVNGLGYATRSSITDNLQKANADAAVKSIVLTGAGKAFSGGADIKEFGTPKALLEPNLLSV IRAVENSSKPVVAAIHTVCMGGGLELALGCHYRIAAPGCSVALPEVKLGLLPGAGGTQRLPRTVGVEPALNMIVSGEPVK SELLAQIPGQKLFDRMAASPESLAEDALAFAQSIADTRPLPLVRNLPCKHPDGDAYFQFARNMVKGMAKNFPAPLKCVDA VEAATKKKFEDGLAFERELFINLMWTPESRALRHIFMAERAASKIPDVPEDTPRREIKSIAVIGAGTMGGGISMNFLNAG IPVKILEMKQEALDRGIATIRKNYESQVKKGKLKQDKYEQRMSLLSTTLSYDDLKDADMVIEAVFEEMGVKEKVLKELDR VMKPGAILASNTSTLDMNQIASFTKRPQDVIGTHFFSPANVMKLLEVVRGEKTAKDVLATVMALGKKIKKTAVVSGVCDG FIGNRMIEQYSRQAGFLLEEGATPAQVDKAVEKFGFAMGPFRMGDLAGNDIGWAIRKRRYQEKPGMKYSKTADLLCEMGR YGQKTGAGWYDYVPGKRDAIPSQVVVDMIEKHRKDIGVTPRRISDEEIVERLVYSLVNEAAHILEEGIASKASDIDMVYL TGYGFPLHRGGPMLYADQMGLFNVVQSMNRFAQNPLDDASFWKPAPLLARLAAEGKTFN
Sequences:
>Translated_699_residues MTTHYEVRGTVALITLDNPPVNGLGYATRSSITDNLQKANADAAVKSIVLTGAGKAFSGGADIKEFGTPKALLEPNLLSV IRAVENSSKPVVAAIHTVCMGGGLELALGCHYRIAAPGCSVALPEVKLGLLPGAGGTQRLPRTVGVEPALNMIVSGEPVK SELLAQIPGQKLFDRMAASPESLAEDALAFAQSIADTRPLPLVRNLPCKHPDGDAYFQFARNMVKGMAKNFPAPLKCVDA VEAATKKKFEDGLAFERELFINLMWTPESRALRHIFMAERAASKIPDVPEDTPRREIKSIAVIGAGTMGGGISMNFLNAG IPVKILEMKQEALDRGIATIRKNYESQVKKGKLKQDKYEQRMSLLSTTLSYDDLKDADMVIEAVFEEMGVKEKVLKELDR VMKPGAILASNTSTLDMNQIASFTKRPQDVIGTHFFSPANVMKLLEVVRGEKTAKDVLATVMALGKKIKKTAVVSGVCDG FIGNRMIEQYSRQAGFLLEEGATPAQVDKAVEKFGFAMGPFRMGDLAGNDIGWAIRKRRYQEKPGMKYSKTADLLCEMGR YGQKTGAGWYDYVPGKRDAIPSQVVVDMIEKHRKDIGVTPRRISDEEIVERLVYSLVNEAAHILEEGIASKASDIDMVYL TGYGFPLHRGGPMLYADQMGLFNVVQSMNRFAQNPLDDASFWKPAPLLARLAAEGKTFN >Mature_698_residues TTHYEVRGTVALITLDNPPVNGLGYATRSSITDNLQKANADAAVKSIVLTGAGKAFSGGADIKEFGTPKALLEPNLLSVI RAVENSSKPVVAAIHTVCMGGGLELALGCHYRIAAPGCSVALPEVKLGLLPGAGGTQRLPRTVGVEPALNMIVSGEPVKS ELLAQIPGQKLFDRMAASPESLAEDALAFAQSIADTRPLPLVRNLPCKHPDGDAYFQFARNMVKGMAKNFPAPLKCVDAV EAATKKKFEDGLAFERELFINLMWTPESRALRHIFMAERAASKIPDVPEDTPRREIKSIAVIGAGTMGGGISMNFLNAGI PVKILEMKQEALDRGIATIRKNYESQVKKGKLKQDKYEQRMSLLSTTLSYDDLKDADMVIEAVFEEMGVKEKVLKELDRV MKPGAILASNTSTLDMNQIASFTKRPQDVIGTHFFSPANVMKLLEVVRGEKTAKDVLATVMALGKKIKKTAVVSGVCDGF IGNRMIEQYSRQAGFLLEEGATPAQVDKAVEKFGFAMGPFRMGDLAGNDIGWAIRKRRYQEKPGMKYSKTADLLCEMGRY GQKTGAGWYDYVPGKRDAIPSQVVVDMIEKHRKDIGVTPRRISDEEIVERLVYSLVNEAAHILEEGIASKASDIDMVYLT GYGFPLHRGGPMLYADQMGLFNVVQSMNRFAQNPLDDASFWKPAPLLARLAAEGKTFN
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the central section; belongs to the 3-hydroxyacyl- CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI68989263, Length=719, Percent_Identity=43.3936022253129, Blast_Score=526, Evalue=1e-149, Organism=Homo sapiens, GI261878539, Length=622, Percent_Identity=44.0514469453376, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI20127408, Length=734, Percent_Identity=33.2425068119891, Blast_Score=335, Evalue=1e-91, Organism=Homo sapiens, GI296179429, Length=290, Percent_Identity=31.0344827586207, Blast_Score=127, Evalue=5e-29, Organism=Homo sapiens, GI296179427, Length=307, Percent_Identity=29.3159609120521, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI194097323, Length=284, Percent_Identity=30.6338028169014, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI37594471, Length=151, Percent_Identity=35.7615894039735, Blast_Score=80, Evalue=8e-15, Organism=Homo sapiens, GI115430219, Length=259, Percent_Identity=27.027027027027, Blast_Score=80, Evalue=1e-14, Organism=Homo sapiens, GI37594469, Length=151, Percent_Identity=35.7615894039735, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI70995211, Length=147, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=5e-13, Organism=Escherichia coli, GI1788682, Length=714, Percent_Identity=32.3529411764706, Blast_Score=301, Evalue=8e-83, Organism=Escherichia coli, GI1790281, Length=678, Percent_Identity=33.1858407079646, Blast_Score=298, Evalue=1e-81, Organism=Escherichia coli, GI1787661, Length=323, Percent_Identity=34.3653250773994, Blast_Score=159, Evalue=7e-40, Organism=Escherichia coli, GI1787659, Length=284, Percent_Identity=28.8732394366197, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI221142681, Length=250, Percent_Identity=29.6, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17508951, Length=737, Percent_Identity=37.0420624151967, Blast_Score=345, Evalue=4e-95, Organism=Caenorhabditis elegans, GI17508953, Length=737, Percent_Identity=36.9063772048847, Blast_Score=345, Evalue=6e-95, Organism=Caenorhabditis elegans, GI17558304, Length=733, Percent_Identity=34.6521145975443, Blast_Score=341, Evalue=1e-93, Organism=Caenorhabditis elegans, GI25144276, Length=614, Percent_Identity=37.2964169381108, Blast_Score=298, Evalue=1e-80, Organism=Caenorhabditis elegans, GI71985923, Length=373, Percent_Identity=33.2439678284182, Blast_Score=234, Evalue=2e-61, Organism=Caenorhabditis elegans, GI71985930, Length=371, Percent_Identity=30.4582210242588, Blast_Score=218, Evalue=1e-56, Organism=Caenorhabditis elegans, GI17553560, Length=291, Percent_Identity=32.6460481099656, Blast_Score=143, Evalue=4e-34, Organism=Caenorhabditis elegans, GI17549919, Length=296, Percent_Identity=34.1216216216216, Blast_Score=141, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17563036, Length=291, Percent_Identity=30.9278350515464, Blast_Score=122, Evalue=6e-28, Organism=Caenorhabditis elegans, GI25145438, Length=275, Percent_Identity=30.9090909090909, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17554946, Length=256, Percent_Identity=30.078125, Blast_Score=102, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17540714, Length=153, Percent_Identity=33.9869281045752, Blast_Score=82, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560910, Length=167, Percent_Identity=29.3413173652695, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583077, Length=725, Percent_Identity=33.6551724137931, Blast_Score=312, Evalue=6e-85, Organism=Drosophila melanogaster, GI24583079, Length=725, Percent_Identity=33.6551724137931, Blast_Score=312, Evalue=6e-85, Organism=Drosophila melanogaster, GI19921000, Length=725, Percent_Identity=33.6551724137931, Blast_Score=311, Evalue=9e-85, Organism=Drosophila melanogaster, GI20129971, Length=275, Percent_Identity=29.4545454545455, Blast_Score=106, Evalue=5e-23, Organism=Drosophila melanogaster, GI24653477, Length=275, Percent_Identity=29.4545454545455, Blast_Score=106, Evalue=5e-23, Organism=Drosophila melanogaster, GI24653139, Length=149, Percent_Identity=36.241610738255, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI21357171, Length=160, Percent_Identity=31.875, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24583165, Length=201, Percent_Identity=27.8606965174129, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI45549573, Length=207, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012802 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =1.1.1.35 [H]
Molecular weight: Translated: 76134; Mature: 76003
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTHYEVRGTVALITLDNPPVNGLGYATRSSITDNLQKANADAAVKSIVLTGAGKAFSGG CCCEEEECEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC ADIKEFGTPKALLEPNLLSVIRAVENSSKPVVAAIHTVCMGGGLELALGCHYRIAAPGCS CCHHHHCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCEEEEECCCCC VALPEVKLGLLPGAGGTQRLPRTVGVEPALNMIVSGEPVKSELLAQIPGQKLFDRMAASP EECCCHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCH ESLAEDALAFAQSIADTRPLPLVRNLPCKHPDGDAYFQFARNMVKGMAKNFPAPLKCVDA HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH VEAATKKKFEDGLAFERELFINLMWTPESRALRHIFMAERAASKIPDVPEDTPRREIKSI HHHHHHHHHHHCCHHEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHE AVIGAGTMGGGISMNFLNAGIPVKILEMKQEALDRGIATIRKNYESQVKKGKLKQDKYEQ EEEECCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RMSLLSTTLSYDDLKDADMVIEAVFEEMGVKEKVLKELDRVMKPGAILASNTSTLDMNQI HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHH ASFTKRPQDVIGTHFFSPANVMKLLEVVRGEKTAKDVLATVMALGKKIKKTAVVSGVCDG HHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIGNRMIEQYSRQAGFLLEEGATPAQVDKAVEKFGFAMGPFRMGDLAGNDIGWAIRKRRY HHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH QEKPGMKYSKTADLLCEMGRYGQKTGAGWYDYVPGKRDAIPSQVVVDMIEKHRKDIGVTP HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC RRISDEEIVERLVYSLVNEAAHILEEGIASKASDIDMVYLTGYGFPLHRGGPMLYADQMG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCEEEEHHHH LFNVVQSMNRFAQNPLDDASFWKPAPLLARLAAEGKTFN HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure TTHYEVRGTVALITLDNPPVNGLGYATRSSITDNLQKANADAAVKSIVLTGAGKAFSGG CCEEEECEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC ADIKEFGTPKALLEPNLLSVIRAVENSSKPVVAAIHTVCMGGGLELALGCHYRIAAPGCS CCHHHHCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCEEEEECCCCC VALPEVKLGLLPGAGGTQRLPRTVGVEPALNMIVSGEPVKSELLAQIPGQKLFDRMAASP EECCCHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCH ESLAEDALAFAQSIADTRPLPLVRNLPCKHPDGDAYFQFARNMVKGMAKNFPAPLKCVDA HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH VEAATKKKFEDGLAFERELFINLMWTPESRALRHIFMAERAASKIPDVPEDTPRREIKSI HHHHHHHHHHHCCHHEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHE AVIGAGTMGGGISMNFLNAGIPVKILEMKQEALDRGIATIRKNYESQVKKGKLKQDKYEQ EEEECCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RMSLLSTTLSYDDLKDADMVIEAVFEEMGVKEKVLKELDRVMKPGAILASNTSTLDMNQI HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHH ASFTKRPQDVIGTHFFSPANVMKLLEVVRGEKTAKDVLATVMALGKKIKKTAVVSGVCDG HHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIGNRMIEQYSRQAGFLLEEGATPAQVDKAVEKFGFAMGPFRMGDLAGNDIGWAIRKRRY HHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH QEKPGMKYSKTADLLCEMGRYGQKTGAGWYDYVPGKRDAIPSQVVVDMIEKHRKDIGVTP HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC RRISDEEIVERLVYSLVNEAAHILEEGIASKASDIDMVYLTGYGFPLHRGGPMLYADQMG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCEEEEHHHH LFNVVQSMNRFAQNPLDDASFWKPAPLLARLAAEGKTFN HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA