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The map label for this gene is ligD [H]

Identifier: 91788423

GI number: 91788423

Start: 2682182

End: 2683087

Strand: Reverse

Name: ligD [H]

Synonym: Bpro_2561

Alternate gene names: 91788423

Gene position: 2683087-2682182 (Counterclockwise)

Preceding gene: 91788424

Following gene: 91788422

Centisome position: 51.6

GC content: 61.37

Gene sequence:

>906_bases
ATGATCACGGACTTCAAAGGAAAAACTGCGGTGCTGACCGGCGCGGGGTCAGGTTTCGGCCTGGAGTGCGCGCGCATAGG
GGCCAAGCTGGGCATGAACCTGGTGCTGGTCGATGTGCAGCAGGATGCACTGGATCAGGCAAGCGCCGAGATCAGGGCCA
CCGGGGCCCAGGTGCTGCCCTTCAGGCTGGACGTTGCCAGTGCCGAACAGATGGAGGCCATGGGCAAGGCGGTGTTTGAG
CGTTTTGGCGCACCGCATTTTGTATTCAACAACGCCGGCGTCGGCTCCGGCGGACTGATCTGGGAGAACAGCGTCAAGGA
CTGGGAGTGGGTGCTGGGCGTCAATGTGATGGGTGTGGTGCACGGCGTGCGTATCTTCACGCCCATGATGCTGGAGGCTG
CGGCCAAAGATCCCGCCTGGCAGGGTCACATCGTCAACACCGCCAGCATGGCCGGGCTGCTGAACCCGCCCAATATGGGC
GTGTACAACGTGAGCAAACATGCCGTGGTGTCCCTGAGCGAAACGCTGTATCAGGATTTGTCGCTGGTGACCGACCAGAT
CGGTGCATCGGTGCTGTGCCCGTTTTTTGTAGCCACCGGCATCGGCATGAGCCACCGCAACCGCCCGGCTGAGCTGGCAA
CCGACAAACCGACCAAAAGCCAGCTCATCCAGCAGGCCATGACCGGCAAGGCCGTGGGTTCTGGCAAGGTTACCGCCGCC
CACGTTGCGCAACTGGTGTTTGACGCCATCGCAGCCAACCAGTTTTACATCTACAGCCATCCCAAGGCCATTCATTCCGT
GCAGACCCGGCTCGAGGATGTACTGCAGGCCCGCAACCCGACCGACCCGTTTGCCGACAAACCTGAAATTGGACAGCAGC
TCAAGCAGGCGTTGCGAGCGGCTTGA

Upstream 100 bases:

>100_bases
CCCGGATCAAGTCCGGGACGACGCACCAAGGGCAAGGGCTTGACTGAACCGTATTGGGCCTAATGTTGATTTTTAAATTT
CAGGTATCAAGGAGCGATGG

Downstream 100 bases:

>100_bases
GTCGCGGATATGCGTGGATATGAGGCTGGCAACACACATATACTTTTTCCTGGCTGTGCGTTCGGGCGCATTCGGATGCG
ATCGGGTGCAGGGGCTTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MITDFKGKTAVLTGAGSGFGLECARIGAKLGMNLVLVDVQQDALDQASAEIRATGAQVLPFRLDVASAEQMEAMGKAVFE
RFGAPHFVFNNAGVGSGGLIWENSVKDWEWVLGVNVMGVVHGVRIFTPMMLEAAAKDPAWQGHIVNTASMAGLLNPPNMG
VYNVSKHAVVSLSETLYQDLSLVTDQIGASVLCPFFVATGIGMSHRNRPAELATDKPTKSQLIQQAMTGKAVGSGKVTAA
HVAQLVFDAIAANQFYIYSHPKAIHSVQTRLEDVLQARNPTDPFADKPEIGQQLKQALRAA

Sequences:

>Translated_301_residues
MITDFKGKTAVLTGAGSGFGLECARIGAKLGMNLVLVDVQQDALDQASAEIRATGAQVLPFRLDVASAEQMEAMGKAVFE
RFGAPHFVFNNAGVGSGGLIWENSVKDWEWVLGVNVMGVVHGVRIFTPMMLEAAAKDPAWQGHIVNTASMAGLLNPPNMG
VYNVSKHAVVSLSETLYQDLSLVTDQIGASVLCPFFVATGIGMSHRNRPAELATDKPTKSQLIQQAMTGKAVGSGKVTAA
HVAQLVFDAIAANQFYIYSHPKAIHSVQTRLEDVLQARNPTDPFADKPEIGQQLKQALRAA
>Mature_301_residues
MITDFKGKTAVLTGAGSGFGLECARIGAKLGMNLVLVDVQQDALDQASAEIRATGAQVLPFRLDVASAEQMEAMGKAVFE
RFGAPHFVFNNAGVGSGGLIWENSVKDWEWVLGVNVMGVVHGVRIFTPMMLEAAAKDPAWQGHIVNTASMAGLLNPPNMG
VYNVSKHAVVSLSETLYQDLSLVTDQIGASVLCPFFVATGIGMSHRNRPAELATDKPTKSQLIQQAMTGKAVGSGKVTAA
HVAQLVFDAIAANQFYIYSHPKAIHSVQTRLEDVLQARNPTDPFADKPEIGQQLKQALRAA

Specific function: Catalyzes the C alpha dehydrogenation of arylglycerol- beta-aryl ether (C alpha alcohol type) (compound IV) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=32.3076923076923, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=25.2066115702479, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI210032110, Length=230, Percent_Identity=31.7391304347826, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=26.6990291262136, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=29.2929292929293, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310128830, Length=204, Percent_Identity=25.4901960784314, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI310115468, Length=204, Percent_Identity=25.4901960784314, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI25282469, Length=248, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=264, Percent_Identity=25.3787878787879, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=30.635838150289, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787905, Length=126, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082160, Length=205, Percent_Identity=24.8780487804878, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=28.2828282828283, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI193203117, Length=201, Percent_Identity=27.8606965174129, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=29.2929292929293, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=27.6381909547739, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17567345, Length=206, Percent_Identity=28.6407766990291, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=227, Percent_Identity=25.1101321585903, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=23.6, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640492, Length=255, Percent_Identity=25.8823529411765, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281364892, Length=201, Percent_Identity=27.8606965174129, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21357041, Length=178, Percent_Identity=29.7752808988764, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281364494, Length=206, Percent_Identity=27.6699029126214, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571526, Length=181, Percent_Identity=29.2817679558011, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581726, Length=209, Percent_Identity=26.7942583732057, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24648944, Length=212, Percent_Identity=27.3584905660377, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=25.7028112449799, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355631, Length=237, Percent_Identity=24.0506329113924, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=26.6990291262136, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=30, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32098; Mature: 32098

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDFKGKTAVLTGAGSGFGLECARIGAKLGMNLVLVDVQQDALDQASAEIRATGAQVLP
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
FRLDVASAEQMEAMGKAVFERFGAPHFVFNNAGVGSGGLIWENSVKDWEWVLGVNVMGVV
EEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHH
HGVRIFTPMMLEAAAKDPAWQGHIVNTASMAGLLNPPNMGVYNVSKHAVVSLSETLYQDL
HHHHHHHHHHHHHHHCCCCCCCEEECHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHH
SLVTDQIGASVLCPFFVATGIGMSHRNRPAELATDKPTKSQLIQQAMTGKAVGSGKVTAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
HVAQLVFDAIAANQFYIYSHPKAIHSVQTRLEDVLQARNPTDPFADKPEIGQQLKQALRA
HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
A
C
>Mature Secondary Structure
MITDFKGKTAVLTGAGSGFGLECARIGAKLGMNLVLVDVQQDALDQASAEIRATGAQVLP
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
FRLDVASAEQMEAMGKAVFERFGAPHFVFNNAGVGSGGLIWENSVKDWEWVLGVNVMGVV
EEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHH
HGVRIFTPMMLEAAAKDPAWQGHIVNTASMAGLLNPPNMGVYNVSKHAVVSLSETLYQDL
HHHHHHHHHHHHHHHCCCCCCCEEECHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHH
SLVTDQIGASVLCPFFVATGIGMSHRNRPAELATDKPTKSQLIQQAMTGKAVGSGKVTAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
HVAQLVFDAIAANQFYIYSHPKAIHSVQTRLEDVLQARNPTDPFADKPEIGQQLKQALRA
HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1744051; 8495726; 7764263 [H]